Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060465.seq
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990,106... 48 7e-06
04_04_1360 + 32889597-32890343 38 0.005
04_04_0349 + 24588184-24588315,24588481-24588543,24588674-245887... 35 0.066
09_04_0721 + 19725695-19725697,19725793-19725859,19725944-197260... 34 0.12
07_03_1453 - 26649922-26650064,26650148-26650244,26651260-266514... 33 0.20
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757... 33 0.20
03_06_0526 - 34515218-34515372,34515454-34515567,34515651-345157... 31 0.62
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437... 25 0.83
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 30 1.9
06_01_0651 + 4711369-4712431,4713069-4713763 28 5.8
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 5.8
02_03_0039 - 14228876-14228878,14229578-14229727,14230457-142306... 28 5.8
02_04_0019 - 18951037-18951180,18951939-18952403 28 7.6
>02_01_0151 +
1067067-1067222,1067586-1067690,1067904-1067990,
1068071-1068121,1068265-1068291,1068292-1068385,
1068610-1068845
Length = 251
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 97 LEIVIPELLSAGYSFYTWPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
L + I E + Y + WP + +L Y+W QR V+ELG GT LPG++
Sbjct: 46 LRVDIIENIEEDYGMFVWPCSVILAEYVWQQRSRFTASTVVELGAGTSLPGLV 98
Score = 34.3 bits (75), Expect = 0.088
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = +2
Query: 275 VTLTDSLTLPRSLRHLSACCEANGL--VPNRD---LQIVGLTWGLFLGDLHNLRPVDLIL 439
VTLTD L ++ C N + N+ +Q++GLTWG + +L P D+IL
Sbjct: 106 VTLTDIAHNTEVLNNIRQVCGLNNVNCTLNKSTTLMQVLGLTWGEWDEPTFDLHP-DVIL 164
Query: 440 ASDCFYEPSQFEEVLS-TVAYLLEALNARFLCSY 538
+D Y+ ++ S V YL+ + L +
Sbjct: 165 GADVLYDSARIVLPFSLCVNYLIPVCSGHHLIEF 198
>04_04_1360 + 32889597-32890343
Length = 248
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 142 YTWPSAPLLXWYLWT--QRRHIRGLRVLELGCGTGLPGI 252
+ W S+ +L +L + H+RG VLELG GTGLPGI
Sbjct: 46 WLWDSSLVLASHLASCVHHHHLRGATVLELGAGTGLPGI 84
>04_04_0349 +
24588184-24588315,24588481-24588543,24588674-24588740,
24588819-24588919,24589082-24589126,24589236-24589697,
24589905-24590075
Length = 346
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 202 RGLRVLELGCGTGLPGILPRSAEARNPHRQSNITE 306
RG RVLELGCG+GL GI A H Q E
Sbjct: 115 RGKRVLELGCGSGLAGIFACLKGASTVHFQDTNAE 149
>09_04_0721 +
19725695-19725697,19725793-19725859,19725944-19726044,
19726780-19726824,19727052-19727522,19727972-19728142
Length = 285
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +1
Query: 202 RGLRVLELGCGTGLPGILPRSAEARNPHRQSNITEI 309
R +VLELGCG GLPGI A H Q EI
Sbjct: 51 RSKQVLELGCGYGLPGIFACLKGASTVHFQDPSAEI 86
>07_03_1453 -
26649922-26650064,26650148-26650244,26651260-26651418,
26651478-26651603
Length = 174
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 148 WPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
WP A L+ YL ++ ++ELG G G+ GIL
Sbjct: 98 WPGAVLMNTYLSEHPETVKDHSIIELGSGVGITGIL 133
>03_02_0334 +
7570568-7570709,7571622-7571844,7572178-7572257,
7572869-7572929,7573670-7573796
Length = 210
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 148 WPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGI 252
WPS +L +Y R +VLELG G GL G+
Sbjct: 151 WPSEEVLAYYCINHSDMFRSKKVLELGSGYGLAGL 185
>03_06_0526 -
34515218-34515372,34515454-34515567,34515651-34515722,
34515832-34515974,34516457-34516635,34517798-34517874,
34517994-34518150
Length = 298
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 148 WPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGILPRSA 267
WP L +L + + G R+LELG GTG I R A
Sbjct: 111 WPGTFLFADWLVKNKSILHGRRILELGSGTGALAIFLRKA 150
>01_05_0769 -
25042022-25042447,25042856-25043234,25043714-25043763,
25044222-25044442,25045085-25045385
Length = 458
Score = 25.0 bits (52), Expect(2) = 0.83
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 106 VIPELLSAGYSFYTWPSAPLLXWYLWTQRRHIRGLR 213
++ +A + W + L W WT RR R LR
Sbjct: 12 ILAAAAAAAVAALLWLAVSTLEWAWWTPRRLERALR 47
Score = 24.6 bits (51), Expect(2) = 0.83
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 217 LELGCGTGLPGILPRSAEARNPHRQSNITEIASSP 321
L LGC +P +LP ++A H + + T +P
Sbjct: 78 LPLGCHDIIPRVLPMFSKAVEEHGKPSFTWFGPTP 112
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = -3
Query: 477 SSNCDGS*KQSDARIRSTGRKLCRSPKNKPHVRPTICKSRLGTKPLASQQAER----*RS 310
S NC ++ R +GR+ +P+N PH PT +S G + Q +R S
Sbjct: 492 SDNCHRIGYGGNSANRKSGREYKETPENTPHTGPTSDQSPEGCRSSNYLQRKRSFGSPYS 551
Query: 309 DLGNVRLSVRVTSLRTSR 256
N +TSL TS+
Sbjct: 552 GSSNNNSKTGITSLNTSK 569
>06_01_0651 + 4711369-4712431,4713069-4713763
Length = 585
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 16 GRPVSGQLKKFVFRARSSTNGDTRGEYLEIVI---PELLSAGYSFYTWPSAP 162
G PV+GQ +AR N DT + PELL++G S T+ P
Sbjct: 440 GAPVAGQSNVLTAQARGDPNEDTGFSVHNCTVVASPELLASGVSTRTFLGRP 491
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 326 ACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCF-YEPSQFEEVLSTVAYL 502
A ++ G V N + +V + WG F L P D+ ++ + Y FE+++S V YL
Sbjct: 270 AIIKSLGRVTNSERTVVNVEWGSFRPPQIELTPYDICFNNETWNYYDQGFEKMISGV-YL 328
Query: 503 LE 508
E
Sbjct: 329 GE 330
>02_03_0039 -
14228876-14228878,14229578-14229727,14230457-14230631,
14231320-14231822
Length = 276
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -1
Query: 335 HNKQKGDEAISVMLDCR*GLRAS--ALRGSIPGSPVPQPNSNTLRPRICRLCVHKYQXSR 162
H+ + A+S L CR GL AS A + SP P+P + R + C R
Sbjct: 22 HSNRVSPSAVS--LRCRHGLTASVRASLSTAAPSPPPRPAAAAADGRAPKRCFR-----R 74
Query: 161 GADGHV 144
GADGH+
Sbjct: 75 GADGHL 80
>02_04_0019 - 18951037-18951180,18951939-18952403
Length = 202
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 359 RDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQF---EEVLSTVAYLLEALNA 520
R+++++ G+ L L+P+ ++ SDC E+ LST+AY++ +NA
Sbjct: 83 REMELLAYKEGIALAIQWTLKPI--VVESDCLEAVRMLQYAEKDLSTLAYIIREINA 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,108,288
Number of Sequences: 37544
Number of extensions: 378872
Number of successful extensions: 998
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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