Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060465.seq
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4631| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   3e-07
SB_3762| Best HMM Match : MTS (HMM E-Value=0.11)                       37   0.017
SB_14415| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      33   0.16 
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)                 33   0.27 
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 32   0.48 
SB_19902| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   29   3.4  
SB_41474| Best HMM Match : Ubie_methyltran (HMM E-Value=0.54)          29   3.4  
SB_23648| Best HMM Match : Atracotoxin (HMM E-Value=0.22)              29   4.5  
SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_16292| Best HMM Match : Lipase_GDSL (HMM E-Value=0.036)             28   7.8  
SB_54800| Best HMM Match : zf-A20 (HMM E-Value=6.6)                    28   7.8  
SB_43499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_37606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_4631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +2

Query: 272 LVTLTDSLTLPRSLRHLSACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDC 451
           LV+L+DS   P  L +     +AN +   + L ++G+TWG +  +L NL   D+IL SDC
Sbjct: 18  LVSLSDSEDYPECLANCHKSIQANNV---QTLDVLGVTWGQYSPNLINLPSQDIILGSDC 74

Query: 452 FYEP 463
           FY+P
Sbjct: 75  FYDP 78


>SB_3762| Best HMM Match : MTS (HMM E-Value=0.11)
          Length = 286

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +1

Query: 106 VIPELLSAGYSFYTWPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGI 252
           +IP +   G     W  A  L  +L   +  ++  RVLELGCG GLPGI
Sbjct: 86  LIPSVYEGGLKI--WECAVDLVEFLQESQILLQNRRVLELGCGAGLPGI 132


>SB_14415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 79  DTRGEYLEIVIPELLSAGYSFYTWPSAPLLXWYLWTQRRHIR-GL---RVLELGCGTGLP 246
           +  G Y  +VI + +S       W +A +L  YL T   ++  GL   R +ELG GTG+ 
Sbjct: 19  ELEGNYGNLVIKQAVSGDVGCVVWDAAIVLAKYLETDGFNVNYGLAKKRAVELGAGTGVV 78

Query: 247 GI 252
           G+
Sbjct: 79  GL 80


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 130 GYSFYTWPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
           G +   W +A +L  YL   +  +   R++ELG GTGL G++
Sbjct: 50  GVAAVLWDAAIILSRYLEQNKELVHQKRIIELGAGTGLVGMV 91


>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
          Length = 827

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = -3

Query: 513 SASSRYATVDSTSSNCDGS*KQSDARIRSTGRKLCRSPKNKPHVRPTICKSRLGTKPLAS 334
           S  S Y++  S S +C+      + R+ ST  +L RS    PH+  +   S +  + L  
Sbjct: 720 STYSSYSSQPSGSRDCESVSSGEEGRVNSTPPRLIRSQMKTPHLDRSGSYSVIDAEALNR 779

Query: 333 QQAER*RSDLGNVRLSVRV-TSLRTSRQ 253
           ++ ER R      RL     T+ R  R+
Sbjct: 780 EELEREREKEKATRLGDNTPTNTRARRR 807


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
 Frame = -3

Query: 534 EHKKRAXSASSRYATVDSTSSNCDGS*KQSDARIRSTGRKLCRSPKNKPHVRP-TICKSR 358
           + +K +   S   +   S  ++   S K S    R T  K   S K  P   P T  K+ 
Sbjct: 95  DKRKTSRKTSLNASRKTSRKTSLKRSLKTSPKTSRRTSLKT--SQKTSPKTSPKTSLKTS 152

Query: 357 LGTKPLASQQAER*RSDLGNVRLSVRVTSLRTSRQYSRQSCSAT*LQHSQTANMS 193
           L T    S +A    S   +++ S++ TSL+TSR+ S ++C  T L+ S    ++
Sbjct: 153 LKTSLKTSLKASLKTSLKTSLKTSMK-TSLKTSRRTSLKTCPKTSLETSMKTRLN 206


>SB_19902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +1

Query: 91  EYLEIVIPELLSAGYSFYTWPSA----PLLXWYLWTQRRHIRGLRVLELGCGTGLPGILP 258
           +Y  +V+P +    ++F+ + ++    PL      T RR + GL    LGCG     + P
Sbjct: 61  QYKVVVLPNVWYWVFNFFAFFNSCCNPPLYCLTNKTYRREVLGL----LGCGKCGAEVAP 116

Query: 259 RSAEARNPHRQSNITEI 309
            +A  ++ H QS I EI
Sbjct: 117 ENAAGQSIHSQSRIYEI 133


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 22  PVSGQLKKFVFRARSSTNGDTRGEYLEIVIPELLSAGYSFYTW 150
           P  G L+   F  R++ N D  G+Y +  +P      +S Y W
Sbjct: 249 PEFGSLEVLPFFVRTANNKDAVGDYQDSYLPSPSCTEWSVYEW 291


>SB_41474| Best HMM Match : Ubie_methyltran (HMM E-Value=0.54)
          Length = 271

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +1

Query: 118 LLSAGYSFYTWPSAPLLXWYLWT-QRRHIRGLRVLELGCGTGL--PGILPRSAEARNPHR 288
           L   G   YT  S   L   L    R H + + +LELG GTGL   GIL    +  + H 
Sbjct: 18  LYEKGRPRYTRESVEYLLKQLGVFDRDHAKPMTILELGAGTGLFTRGIL----KTLDDHY 73

Query: 289 QSNITEIASSP 321
            +N   IAS P
Sbjct: 74  ITNTRVIASDP 84


>SB_23648| Best HMM Match : Atracotoxin (HMM E-Value=0.22)
          Length = 224

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 254 SIPGSPVPQPNSNTLRPRICRL--CVHKYQXSRGADG 150
           +IPG PVP+ N  TL P        + KY+ SR + G
Sbjct: 19  NIPGGPVPEINVPTLMPEFALFDRALTKYETSRASLG 55


>SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 435 IRSTGRKLCRSPKNKPHVRPTICKSRLGTKPLAS 334
           +RS  R   RS + KP  R T  +S+  T+PL+S
Sbjct: 136 LRSLSRASVRSTRGKPPSRSTSIRSQGNTEPLSS 169


>SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 34  QLKKFVFRARSSTNGDTRGEYLEIVIPELLSAGYS 138
           +L+K   R  SS N + +GEY EI+  + +S+ ++
Sbjct: 326 KLRKKTLRESSSINEERKGEYFEIMSVDYMSSEHT 360


>SB_16292| Best HMM Match : Lipase_GDSL (HMM E-Value=0.036)
          Length = 738

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 193 RHIRGLRVL---ELGCGTGLPGILPRSAEA 273
           R  RG+ VL   +L CGTG PG  P+  ++
Sbjct: 80  REFRGIPVLTRTDLQCGTGFPGSTPKFGQS 109


>SB_54800| Best HMM Match : zf-A20 (HMM E-Value=6.6)
          Length = 86

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 281 GLR-ASALRGSIPGSPVPQPNSNTLRPRICRLCV 183
           GLR A   +G  PG PV  P  +  R  +C +CV
Sbjct: 48  GLRVAKTSKGQKPGCPVHVPAQHADRSSVCWMCV 81


>SB_43499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 281 GLR-ASALRGSIPGSPVPQPNSNTLRPRICRLCV 183
           GLR A   +G  PG PV  P  +  R  +C +CV
Sbjct: 318 GLRVAKTSKGQKPGCPVHVPAQHADRSSVCWMCV 351


>SB_37606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 88  GEYLEIVIPELLSAGYSFYTW 150
           GEYL I++ E  S GY+  TW
Sbjct: 9   GEYLRILVTESQSIGYNRVTW 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,810
Number of Sequences: 59808
Number of extensions: 436968
Number of successful extensions: 1088
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)