Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060465.seq
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical pr...    42   5e-04
CU457741-20|CAO82033.1|  206|Caenorhabditis elegans Hypothetical...    33   0.24 
Z66514-2|CAA91342.1|  229|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    30   1.3  
Z48009-6|CAA88079.1|  329|Caenorhabditis elegans Hypothetical pr...    29   2.2  
CU457741-19|CAM36356.1|  167|Caenorhabditis elegans Hypothetical...    27   9.0  

>U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical
           protein W06B4.2 protein.
          Length = 521

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
 Frame = +2

Query: 275 VTLTDSLTLPRSLRHLSACCEANGLVPNRDLQIVGLTWGLFLG-----DLHNLRPVDLIL 439
           V +TD   L  +L  L    EANG+       + GL W          D    R +D+I+
Sbjct: 58  VWMTDHPKLEAALETLQRNIEANGVAEK--CIVTGLDWESRASVSAVCDQIGDRHLDVII 115

Query: 440 ASDCFYEPSQFEEVLSTVAYLL-EALNARFLCSYQERSTDWS 562
           ASD F++PS F  ++ T A LL +  +A    +YQ R  +W+
Sbjct: 116 ASDVFFDPSTFCPLIDTFAQLLIKFEHATIWFAYQLRDDNWT 157


>CU457741-20|CAO82033.1|  206|Caenorhabditis elegans Hypothetical
           protein C42C1.13b protein.
          Length = 206

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 148 WPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGI 252
           W SA +   Y +   +   G +VLELG GTG+ GI
Sbjct: 35  WDSALMTIHYFFKYPKPFEGKKVLELGSGTGVGGI 69


>Z66514-2|CAA91342.1|  229|Caenorhabditis elegans Hypothetical
           protein K01A11.2 protein.
          Length = 229

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +1

Query: 139 FYTWPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
           F  W     L  Y+   +    G  VLELGCG  LP IL
Sbjct: 54  FKIWECTVDLCDYIEENQTLFAGKSVLELGCGAALPSIL 92


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 534 EHKKRAXSASSRYATVDSTSSNCDGS*KQSDARIRSTGRKLCRSPKNK 391
           E KKRA S+SS  ++   +SS+   S     +   S+GR   RSP+ +
Sbjct: 6   ETKKRARSSSSSSSSSSGSSSSGSSSSGSRSSSSSSSGRSRSRSPRRR 53


>Z48009-6|CAA88079.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.8 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 277 YEPPHFAAVFPAVLFRNLTPTLSDREYVAFASTSTK 170
           Y PP+ AA FP ++F  +  + ++R  +    T+TK
Sbjct: 279 YTPPYIAASFPILIFYRIRSSYANRVLIIKKFTNTK 314


>CU457741-19|CAM36356.1|  167|Caenorhabditis elegans Hypothetical
           protein C42C1.13a protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 175 YLWTQRRHIRGLRVLELGCGTGLPGI 252
           Y +   +   G +VLELG GTG+ GI
Sbjct: 5   YFFKYPKPFEGKKVLELGSGTGVGGI 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,226,357
Number of Sequences: 27780
Number of extensions: 311570
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)