Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060465.seq
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.49 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 393 CFWVIYITY 419
           C+WVIY+TY
Sbjct: 486 CYWVIYVTY 494



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 588 DSKVHFLGPGTSLSES 635
           DS++ FLGP  SLS S
Sbjct: 95  DSRLSFLGPIKSLSLS 110


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 368 ASHDWVPSR*LHNKQKGDEAISVM 297
           + H W+P   L+N   G+  +++M
Sbjct: 99  SEHIWLPDIVLYNNADGNYEVTIM 122


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 368 ASHDWVPSR*LHNKQKGDEAISVM 297
           + H W+P   L+N   G+  ++ M
Sbjct: 99  SEHIWLPDIVLYNNADGEYGVTTM 122


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 244  AVLFRNLTPTL---SDREYVAFASTSTKXAEAQMATCKTNNRLTIAPG 110
            ++   N  PT+   SDR+  A  +TS K     +     +++  ++PG
Sbjct: 868  SISHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPG 915


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,395
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)