Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060465.seq
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63855.3 68414.m07228 expressed protein 48 4e-06
At1g63855.2 68414.m07230 expressed protein 48 4e-06
At1g63855.1 68414.m07229 expressed protein 48 4e-06
At3g50850.1 68416.m05568 expressed protein 40 0.001
At5g49560.1 68418.m06134 expressed protein similar to SP|P40389 ... 38 0.006
At2g43320.1 68415.m05386 expressed protein 33 0.13
At4g14000.1 68417.m02165 expressed protein 31 0.90
At5g63910.1 68418.m08025 expressed protein 30 1.6
At2g26200.1 68415.m03146 expressed protein 29 2.8
At2g26810.1 68415.m03217 expressed protein and genefinder 29 3.6
At5g33230.1 68418.m03927 hypothetical protein 28 6.4
At3g48900.1 68416.m05342 single-strand DNA endonuclease, putativ... 28 6.4
>At1g63855.3 68414.m07228 expressed protein
Length = 196
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +1
Query: 103 IVIPELLSAGYSFYTWPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
I I E L Y + WP + +L Y+W R R +LELG GT LPG++
Sbjct: 24 ISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELGAGTSLPGLV 74
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +2
Query: 275 VTLTDSLTLPRSLRHLSACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCF 454
VTLTD T P L ++ CE N L + ++GLTWG++ + +LRP ++IL +D
Sbjct: 82 VTLTDDATKPEVLDNMRRVCELNKL----NCNVLGLTWGVWDAPILDLRP-NIILGADVL 136
Query: 455 YEPS 466
Y+ S
Sbjct: 137 YDSS 140
>At1g63855.2 68414.m07230 expressed protein
Length = 111
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +1
Query: 103 IVIPELLSAGYSFYTWPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
I I E L Y + WP + +L Y+W R R +LELG GT LPG++
Sbjct: 24 ISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELGAGTSLPGLV 74
>At1g63855.1 68414.m07229 expressed protein
Length = 159
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +1
Query: 103 IVIPELLSAGYSFYTWPSAPLLXWYLWTQRRHIRGLRVLELGCGTGLPGIL 255
I I E L Y + WP + +L Y+W R R +LELG GT LPG++
Sbjct: 24 ISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELGAGTSLPGLV 74
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +2
Query: 275 VTLTDSLTLPRSLRHLSACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCF 454
VTLTD T P L ++ CE N L + ++GLTWG++ + +LRP ++IL +D
Sbjct: 82 VTLTDDATKPEVLDNMRRVCELNKL----NCNVLGLTWGVWDAPILDLRP-NIILGADVL 136
Query: 455 YEPS 466
Y+ S
Sbjct: 137 YDSS 140
>At3g50850.1 68416.m05568 expressed protein
Length = 251
Score = 40.3 bits (90), Expect = 0.001
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Frame = +2
Query: 275 VTLTDSLTLPRSLRHLSACCEANGLVPNR---DLQIVGLTWGLFLGDLHNL-RPVDLILA 442
VT+TD LP + +L +AN V + + + L WG + D+ +L + VDLILA
Sbjct: 114 VTVTD---LPNVIENLKFNADANAQVVAKFGGKVHVASLRWGE-IDDVESLGQNVDLILA 169
Query: 443 SDCFYEPSQFEEVLSTVAY-LLEALNAR-FLCSYQER 547
SD Y +E +L T+ + LLE + R FL ++ +R
Sbjct: 170 SDVVYHVHLYEPLLKTLRFLLLEGSSERVFLMAHLKR 206
>At5g49560.1 68418.m06134 expressed protein similar to SP|P40389
Rapid response to glucose protein 1 {Schizosaccharomyces
pombe}
Length = 274
Score = 37.9 bits (84), Expect = 0.006
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +2
Query: 275 VTLTDSLTLPRSLRHLSACCEANGLVPNR---DLQIVGLTWGLFLGDLHNL-RPVDLILA 442
VT+TD LP L +L+ EAN + R + + L WG D+ L + VDLILA
Sbjct: 131 VTVTD---LPHVLDNLNFNAEANAEIVERFGGKVNVAPLRWGE-ADDVEVLGQNVDLILA 186
Query: 443 SDCFYEPSQFEEVLSTVAYL-LEALNARFLCSYQER 547
SD Y +E +L T+ + LE FL ++ R
Sbjct: 187 SDVVYHDHLYEPLLKTLRLMQLEGKRLIFLMAHLRR 222
>At2g43320.1 68415.m05386 expressed protein
Length = 351
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 136 SFYTWPSAPLLXWYLWTQRRH----IRGLRVLELGCGTGLPGILPRSAEARNPHRQ 291
S +W S+ +L L + R RG RVLELGC G+PGI A + H Q
Sbjct: 88 SLKSWESSVVLVNVLKNEIRDGQLSFRGKRVLELGCNFGVPGIFACLKGASSVHFQ 143
>At4g14000.1 68417.m02165 expressed protein
Length = 290
Score = 30.7 bits (66), Expect = 0.90
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 205 GLRVLELGCGTGLPGI 252
G RVLELGCG LPGI
Sbjct: 115 GKRVLELGCGHALPGI 130
>At5g63910.1 68418.m08025 expressed protein
Length = 500
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +3
Query: 105 CYPGAIVSRLFVLHVAICASAXLVLVDAKAT-YSRSESVGVRLRNRTAGNTAAKCGGS*P 281
C G+ + V H S L AK + R E VG R+R T + GGS
Sbjct: 39 CIVGSGIGGSSVAHFLRNYSVSTGLNQAKILMFERHEIVGGRMRTVTVAGDTFEAGGSIL 98
Query: 282 SPTV*HYRDRFVTFLLVVKL 341
P H +D F L V+L
Sbjct: 99 HPKNYHVKDFVERFNLTVRL 118
>At2g26200.1 68415.m03146 expressed protein
Length = 565
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 148 WPSAPLLXWYLWTQRRHIRGLRVLELGCG-TGL 243
W SA L+ L + G RVLELGCG TG+
Sbjct: 358 WESARLMASVLDRNPNIVSGKRVLELGCGCTGI 390
>At2g26810.1 68415.m03217 expressed protein and genefinder
Length = 197
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 148 WPSAPLLXWYLWTQRRHIRGLRVLELGCGTGL 243
WP A L+ YL ++G VLELG G L
Sbjct: 58 WPGAMLMNGYLSENADILQGCSVLELGSGVEL 89
>At5g33230.1 68418.m03927 hypothetical protein
Length = 126
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Frame = -3
Query: 651 CSQHQSFH*VKSQVPESAPLSPHFFSRASIDQSVLRSW*EHKKRAXSASSRYATVDSTSS 472
CS+H + +K++ + P S F S +S K + SR + S
Sbjct: 6 CSKHAKYTLIKARYEDMRPGSATDFVPPSYQPRDTQS----KALVIHSGSRDPVPPTIES 61
Query: 471 NCDGS*KQSDARIRSTGRKLCRSPKNKPHVRPTI-CKSRLGTKP 343
DGS + + + +K S K + HV PT+ + G KP
Sbjct: 62 LSDGSDESDEEDKKKKKKKKQISKKKRKHVGPTLETGKKRGRKP 105
>At3g48900.1 68416.m05342 single-strand DNA endonuclease, putative
similar to single-strand DNA endonuclease-1 [Oryza
sativa (japonica cultivar-group)]
gi|16923283|dbj|BAB72003
Length = 337
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 438 RIRSTGRKLCRSP-KNKPHVRPTICKSRLGTKPL 340
++ S G P K+K VRP++C S+ GT PL
Sbjct: 255 KVASEGLSFAEKPRKSKKQVRPSVC-SKKGTLPL 287
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,645
Number of Sequences: 28952
Number of extensions: 293197
Number of successful extensions: 708
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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