Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060464.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 33 0.029
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 33 0.038
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 2.5
SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.3
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 26 5.8
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 5.8
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 25 7.7
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 33.5 bits (73), Expect = 0.029
Identities = 22/90 (24%), Positives = 40/90 (44%)
Frame = +1
Query: 256 DISYSQLPDFAEHSFRELGLSITRLKLNFDNLSVLKESVFTKLDLVDYFSLADNSLPELP 435
D+S+ L + + I RL L + + + + K + Y ++ N L E P
Sbjct: 33 DLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEIL-KFTRLRYLNIRSNVLREFP 91
Query: 436 RHVLQHLPHVKTLDLCRNKITKLTEKISGI 525
+ + L ++ LD+ RNKI +L E +
Sbjct: 92 ESLCR-LESLEILDISRNKIKQLPESFGAL 120
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 33.1 bits (72), Expect = 0.038
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Frame = +1
Query: 247 NRPDISYSQLPDFAEHSFR----ELGLSITRLKLNFDNLSVLKESVFTKLDL------VD 396
NRP +L SFR E + + L+ NL L + F LD V
Sbjct: 813 NRPP-DIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNL-YLSNNTFVTLDCKHMFLGVR 870
Query: 397 YFSLADNSLPELPRHVLQHLPHVKTLDLCRNKITKL 504
Y LA+ L E+P+++ +P+++ LDL N I+ +
Sbjct: 871 YLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDI 906
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 27.1 bits (57), Expect = 2.5
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +1
Query: 346 NLSVLKESVFTKLDLVDYFSLADNSLPELPRHVLQHLPHVKTLDLCRNKITKLTEKISGI 525
N+ LKE+++ L+LV ++ P+ V+ H D C N + I
Sbjct: 276 NIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVILRTGHSTVEDFCNN----IHSSIKSQ 331
Query: 526 FKNWSICWSLTIKYSEIEKDALPKGLKHVHL 618
FK+ + W ++ Y + GL HV L
Sbjct: 332 FKH-AYVWGKSVPY-----PGMRVGLSHVLL 356
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 680 ILESSKISESSVQCVLIY*FPRCTCFNPLGN--ASFSISEYLIVSDQQMLQFLNIPE 516
+ + S+I +VQ V + FPR C N L + E + +Q++L FL + E
Sbjct: 684 LAKMSEIRSLNVQTVSVKGFPRRICSNSLFYFVLCMQLEESIGTQEQRLLSFLRVYE 740
>SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 95
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 436 RHVLQHLPHVKTLDLCRNKITKLTEKISGIFKNWSICWSLTIKYSEIEKDALPKGLKHVH 615
R V Q + D+ N +L++K+ + N S+ S E+ A+P+ +++H
Sbjct: 17 RQVRQRILQEHKNDILENLAFELSDKVRRLRSNASLLASTIRMRGEMRIAAIPRAQRNMH 76
Query: 616 LGNQ*IKTH 642
L + +K H
Sbjct: 77 LRD--LKNH 83
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 5.8
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = +1
Query: 544 CWSLTIKYSEIEKDALPKGLKH 609
CW+ ++ + +E +L KG++H
Sbjct: 220 CWNQPLEVARVEMQSLTKGIQH 241
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -3
Query: 238 GTELIR*SSCDFFISVDALTDYQDSAGAGVLTSAGARGDFSSHG 107
G+ ++ SS + ++ L DY + GA + G ++ HG
Sbjct: 171 GSSIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHG 214
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 7.7
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +1
Query: 394 DYFSLADNSLPELPRHVLQHLPHVKTLDLCRNKITK-LTEKISGIF----KNWSICWSLT 558
D+F++ + LPELP+ + H ++D R I L ++G +N + ++
Sbjct: 168 DFFAILEKYLPELPKKGVVH-SFTGSIDEMRRCIEHGLYVGVNGCSLKTEENLEVVRAIP 226
Query: 559 IKYSEIEKDALPKGLKHVHLGNQ*IKT 639
++ +E DA ++ H G+Q +KT
Sbjct: 227 LEKMLLETDAPWCEVRPSHAGHQFLKT 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,930
Number of Sequences: 5004
Number of extensions: 52383
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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