Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060464.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    36   4e-04
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 25/80 (31%), Positives = 41/80 (51%)
 Frame = +1

Query: 256 DISYSQLPDFAEHSFRELGLSITRLKLNFDNLSVLKESVFTKLDLVDYFSLADNSLPELP 435
           D+S ++L    + + R+L L  T L L  + +S      F  LD +    L  N +  L 
Sbjct: 437 DLSGNELTSVPD-ALRDLALLKT-LDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLS 494

Query: 436 RHVLQHLPHVKTLDLCRNKI 495
           R +L  LP+++ L+L RNK+
Sbjct: 495 RGMLWDLPNLQILNLARNKV 514



 Score = 28.3 bits (60), Expect = 0.072
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 328 LKLNFDNLSVLKESVFTKLDLVDYFSLADNSLPELPRHVLQHLPHVKTLDLCRNKI-TKL 504
           L L+++ L+ +   +F  L  +    L +NS+  +  +    L ++ TL+L  NK+ T  
Sbjct: 340 LNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVG 399

Query: 505 TEKISGIF 528
            +  +G+F
Sbjct: 400 AQLFNGLF 407



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 463 VKTLDLCRNKITKLTE 510
           ++ LDL RN+IT+L E
Sbjct: 214 IRILDLSRNEITRLQE 229



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 463 VKTLDLCRNKITKLT 507
           VKTLD   N+IT+L+
Sbjct: 597 VKTLDASHNRITELS 611


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +1

Query: 334 LNFDNLSVLKESVFTKLDLVDYFSLADNSLPELPRHVLQHLPHVKTLDLCRNKITKLTEK 513
           L+FD  S+LKE+  T  + +     AD+ L  +    +    H+K + +  NK+T     
Sbjct: 375 LSFDKQSLLKENTVTCQEAMHMLKNADSQLLVISDDNI----HIKGV-ISLNKLTSYV-- 427

Query: 514 ISGIFK 531
           ISGI K
Sbjct: 428 ISGIVK 433


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 389 KSNLVKTLSFSTLRLSKFNF 330
           KSN+ KTL F    + +F +
Sbjct: 51  KSNMAKTLQFDVHMMLQFRY 70


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 535 WSICWSLT 558
           W ICW++T
Sbjct: 491 WKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 535 WSICWSLT 558
           W ICW++T
Sbjct: 544 WKICWTIT 551


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,020
Number of Sequences: 438
Number of extensions: 3542
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)