Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060463.seq
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0083 + 27580710-27580767,27580869-27580924,27581024-275811...   106   2e-23
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    28   5.9  
08_01_0062 - 434613-434856,434877-435121                               28   5.9  

>05_07_0083 +
           27580710-27580767,27580869-27580924,27581024-27581133,
           27582083-27582148,27582149-27582278,27582636-27582737,
           27582969-27583010,27583153-27583194,27583356-27583432,
           27583730-27583856,27583953-27584120,27584359-27584484,
           27584575-27584685,27584776-27584910,27585540-27585614,
           27585827-27585934,27586015-27586101,27586187-27586273,
           27586762-27586830
          Length = 591

 Score =  106 bits (254), Expect = 2e-23
 Identities = 53/100 (53%), Positives = 73/100 (73%), Gaps = 3/100 (3%)
 Frame = +1

Query: 40  LLSMPPIINSDHSKITLNTKNVFIECTATDLTKAIVVLDTVVSMFSKYCTNEYEVQQCKV 219
           +LS+PPIIN  HS ITL T+NVFIECTATDLTKA +VL+T+V+MFS+YC N++EV+  +V
Sbjct: 230 VLSLPPIINGAHSAITLKTRNVFIECTATDLTKAKIVLNTMVTMFSEYCENKFEVEPVEV 289

Query: 220 FSPDGTYELYPN---FNIEKNLLMLIKPTTILGSVKKVIS 330
            S DG+  +YP+   + +E +L  ++ P  I     KVIS
Sbjct: 290 VSHDGSKTIYPDLSCYKMEVSLSEVVGPIGISLDETKVIS 329



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 419 HSRLDLYEDIAIAYGYNRIARRPVRAVTSGDRTP 520
           H+R DL ED+AIAYGYN + +   + +T G R P
Sbjct: 362 HAR-DLVEDVAIAYGYNNVPKSKPKCMTIGGRQP 394



 Score = 35.1 bits (77), Expect = 0.051
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
 Frame = +3

Query: 261 YREELINVDKANNYIGISEEGDKLASLLSRMCLQTAHEGSV----LRVRVPPTRHDVIHA 428
           Y+ E +++ +    IGIS +  K+ SLL++M LQ     S     + V VPPTR D++HA
Sbjct: 305 YKME-VSLSEVVGPIGISLDETKVISLLNKMQLQAESCPSKGEPRISVSVPPTRSDILHA 363


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 273 LINVDK-ANNYIGISEEGDKLASLLSR 350
           ++N++K ANN +GI E  D+L  +LS+
Sbjct: 159 ILNIEKMANNLVGIDEPRDELIKMLSQ 185


>08_01_0062 - 434613-434856,434877-435121
          Length = 162

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 144 CSSGHGGQHVLEILHERV*STTM 212
           C SGHGG  + ++LH     TT+
Sbjct: 31  CDSGHGGHSIRDLLHRGATMTTL 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,073
Number of Sequences: 37544
Number of extensions: 289776
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)