Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060463.seq
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3744| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   2e-05
SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_11398| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.82)             28   7.9  

>SB_3744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/55 (40%), Positives = 32/55 (58%)
 Frame = +1

Query: 88  LNTKNVFIECTATDLTKAIVVLDTVVSMFSKYCTNEYEVQQCKVFSPDGTYELYP 252
           L+    F      +L KA +VLDT+V+MFS YC   + V+  +V  PDG+  +YP
Sbjct: 111 LSQTKEFTAVELMELYKAKIVLDTLVTMFSVYCKEPFVVESVEVEQPDGSILVYP 165


>SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
 Frame = +1

Query: 40  LLSMPPIINSDHSKITLNTKNVFIECTAT-DLTKAIVVLDT-VVSMFS---KYCTNEYEV 204
           ++S+PP+ NS+ SKI  + ++V +E T++ +L     V+D+ ++ M     K C +  EV
Sbjct: 418 VVSLPPVTNSEASKIKASKQDVLVELTSSKELAVCKQVMDSLILKMIEAGLKSCPSASEV 477

Query: 205 QQCK 216
           Q  K
Sbjct: 478 QATK 481


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 211  CKVFSPDGTYELYPNFNIEKNLLMLIKPTTILGSVK 318
            C    PDGTY + PN+ I     + I PT+I  + K
Sbjct: 1066 CLTLYPDGTYTIAPNYKIVDGTCVKISPTSITPTTK 1101


>SB_11398| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.82)
          Length = 439

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 163 VSMFSKYCTNEYEVQQCKVFSPDGTYELYP 252
           VS+F  YC     +++CK+    GTY+ +P
Sbjct: 116 VSLFGLYCQKVLGIEECKL---HGTYDAFP 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,179
Number of Sequences: 59808
Number of extensions: 345450
Number of successful extensions: 889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)