Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060463.seq
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-8|CAA90360.1|  591|Caenorhabditis elegans Hypothetical pr...    96   2e-20
AC024810-5|AAF60763.1|  507|Caenorhabditis elegans Hypothetical ...    41   0.001
Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    29   4.0  
U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   6.9  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   6.9  

>Z50044-8|CAA90360.1|  591|Caenorhabditis elegans Hypothetical
           protein F22B5.9 protein.
          Length = 591

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
 Frame = +1

Query: 46  SMPPIINSDHSKITLNTKNVFIECTATDLTKAIVVLDTVVSMFSKYCTNEYEVQQCK-VF 222
           SMPPIIN +HSKITLNTKNVFIE TATD  KA VVLDT+V++FS+YC   + ++Q + V+
Sbjct: 233 SMPPIINGEHSKITLNTKNVFIEATATDKQKAFVVLDTIVTLFSQYCAKPFTIEQVEVVY 292

Query: 223 SPDGTYELYP 252
              G  ELYP
Sbjct: 293 EETGVKELYP 302



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +3

Query: 255 LQYREELINVDKANNYIGISEEGDKLASLLSRMCLQT-AHEGSVLRVRVPPTRHDVIHA 428
           L YRE  +   + N  IGI+ + +++A+LL++M L+        L++ VPPTRHD++HA
Sbjct: 304 LSYREMTVTTPEINTKIGINLKDEEMATLLNKMSLKAEVAAKETLKIVVPPTRHDILHA 362


>AC024810-5|AAF60763.1|  507|Caenorhabditis elegans Hypothetical
           protein Y54E10A.6 protein.
          Length = 507

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/74 (25%), Positives = 40/74 (54%)
 Frame = +1

Query: 40  LLSMPPIINSDHSKITLNTKNVFIECTATDLTKAIVVLDTVVSMFSKYCTNEYEVQQCKV 219
           ++S+PPI NSD +K+T++T ++++E ++    +A       + + S+       + Q +V
Sbjct: 424 VISLPPITNSDCTKLTVDTTSIWVEVSSKQSLEACKKTMDELILSSRQIFPTLSIDQVRV 483

Query: 220 FSPDGTYELYPNFN 261
              D    +YP+ N
Sbjct: 484 VDSDTLVSIYPDKN 497


>Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.9 protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 52  PPIINSDHSKIT-LNTKNVFIECTATDLTKAIVVLDTVVSMFSKYCTNEYEVQQC 213
           P I+NS HS    ++  N+ +  T   L    V + +V S F  +C   ++ Q+C
Sbjct: 404 PYIVNSKHSYFHYVSFPNIRMRITPEGLVTYTVRVSSVCSCFMSFCLYPHDRQEC 458


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 464  TRML*RCLRRGPSVNDVVPRGGXSHAQHGALVRGLETH 351
            +++L +C + GP  N  VP     HA  G L   LE H
Sbjct: 961  SKLLIKCDKEGPQHNSFVPAHHCFHAPGGPLKFSLEEH 998


>U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical
           protein T03G6.3 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +1

Query: 58  IINSDHSKITLNTKNVFI--ECTAT-DLTKAIVVLDTVVSMFSK---YCTNEYEVQQCKV 219
           ++ SDH    L  +  F   +C     L K +V   +++ +F+      T  YE   C+V
Sbjct: 242 VVMSDHGYTPLQKEEQFFMEQCLPDYSLVKKVVNSHSMIMVFTNPEDEGTVHYEFSVCEV 301

Query: 220 FSPDGTYE 243
           +SP G Y+
Sbjct: 302 WSPMGDYD 309


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 334 RRCCPGCVSRPRTRAPCCACEXPPRGTTSFTLGPL 438
           R+  PG ++   T      CE P  GT   TLGPL
Sbjct: 13  RKSDPGTLTVRSTADKIATCELPWGGTRMVTLGPL 47


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 334 RRCCPGCVSRPRTRAPCCACEXPPRGTTSFTLGPL 438
           R+  PG ++   T      CE P  GT   TLGPL
Sbjct: 13  RKSDPGTLTVRSTADKIATCELPWGGTRMVTLGPL 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,765
Number of Sequences: 27780
Number of extensions: 249834
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)