Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060463.seq
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   4.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.1  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 267 EELINVDKANNYIGISEEGDKLASLLSRMCLQTAHEG 377
           EE + V    N+I  S+  D L + L  +C+    EG
Sbjct: 138 EESLFVPYITNFIIYSKRMDVLEATLRVLCMTDGKEG 174


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 439 RRHRYSIRVQPHS 477
           RRHRY+ +++P++
Sbjct: 54  RRHRYNFQLKPYN 66


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 439 RRHRYSIRVQPHS 477
           RRHRY+ +++P++
Sbjct: 55  RRHRYNFQLKPYN 67


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 382 CCACEXPPRGTTSFTLGPLRRHR 450
           C AC  PPR T        RR R
Sbjct: 389 CVACSPPPRQTPPSRKESGRRRR 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,162
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)