Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060463.seq
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72550.2 68414.m08390 tRNA synthetase beta subunit family pro...    93   1e-19
At1g72550.1 68414.m08389 tRNA synthetase beta subunit family pro...    93   1e-19
At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ...    29   3.7  
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ...    29   3.7  
At4g12440.1 68417.m01968 adenine phosphoribosyltransferase, puta...    29   3.7  
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ...    27   8.6  

>At1g72550.2 68414.m08390 tRNA synthetase beta subunit family
           protein contains Pfam profiles: PF03484
           phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
           domain; an isoform contains a non-consensus TG acceptor
           splice site at a terminal exon.
          Length = 584

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 41/75 (54%), Positives = 57/75 (76%)
 Frame = +1

Query: 40  LLSMPPIINSDHSKITLNTKNVFIECTATDLTKAIVVLDTVVSMFSKYCTNEYEVQQCKV 219
           +LS+PPIIN  HS ITL TKNVFIECTATDLTKA +VL+T+V+ FS++C  ++E++  +V
Sbjct: 231 VLSLPPIINGAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEV 290

Query: 220 FSPDGTYELYPNFNI 264
              DG   +YP+  +
Sbjct: 291 TYDDGKSYIYPDLAV 305



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
 Frame = +3

Query: 303 IGISEEGDKLASLLSRMCLQTAHEGS-----VLRVRVPPTRHDVIH 425
           IG+S + +++ SLL+RM LQ     S      ++V VPP+R DV+H
Sbjct: 319 IGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSRSDVLH 364



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 431 DLYEDIAIAYGYNRIARR 484
           D+ ED+AIAYG+N I  R
Sbjct: 367 DVMEDVAIAYGFNNIPTR 384


>At1g72550.1 68414.m08389 tRNA synthetase beta subunit family
           protein contains Pfam profiles: PF03484
           phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
           domain; an isoform contains a non-consensus TG acceptor
           splice site at a terminal exon.
          Length = 598

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 41/75 (54%), Positives = 57/75 (76%)
 Frame = +1

Query: 40  LLSMPPIINSDHSKITLNTKNVFIECTATDLTKAIVVLDTVVSMFSKYCTNEYEVQQCKV 219
           +LS+PPIIN  HS ITL TKNVFIECTATDLTKA +VL+T+V+ FS++C  ++E++  +V
Sbjct: 231 VLSLPPIINGAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEV 290

Query: 220 FSPDGTYELYPNFNI 264
              DG   +YP+  +
Sbjct: 291 TYDDGKSYIYPDLAV 305



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
 Frame = +3

Query: 303 IGISEEGDKLASLLSRMCLQTAHEGS-----VLRVRVPPTRHDVIH 425
           IG+S + +++ SLL+RM LQ     S      ++V VPP+R DV+H
Sbjct: 319 IGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSRSDVLH 364



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 431 DLYEDIAIAYGYNRIARR 484
           D+ ED+AIAYG+N I  R
Sbjct: 367 DVMEDVAIAYGFNNIPTR 384


>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein. Closest
           Col-0 homolog to RPP8
          Length = 908

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 261 YREELIN---VDKANNYIGISEEGDKLASLLSRMCLQTAHEGSVLRVRVPPTRHDVIHAW 431
           Y EEL+    V   +NY+    +  ++  ++  +CL  A E + L++ + PT    I+A 
Sbjct: 466 YLEELVRRNLVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQ 525

Query: 432 TSTKT 446
           + +++
Sbjct: 526 SPSRS 530


>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein. Closest
           Col-0 homolog to RPP8
          Length = 908

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 261 YREELIN---VDKANNYIGISEEGDKLASLLSRMCLQTAHEGSVLRVRVPPTRHDVIHAW 431
           Y EEL+    V   +NY+    +  ++  ++  +CL  A E + L++ + PT    I+A 
Sbjct: 466 YLEELVRRNLVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQ 525

Query: 432 TSTKT 446
           + +++
Sbjct: 526 SPSRS 530


>At4g12440.1 68417.m01968 adenine phosphoribosyltransferase,
           putative strong similarity to SP|P31166 Adenine
           phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
           {Arabidopsis thaliana}; contains Pfam profile PF00156:
           Phosphoribosyl transferase domain
          Length = 178

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 434 LYEDIAIAYGYNRIARRPVRAVTSGDRTPPTNXTEXAGXNECARXRATLKRFXF 595
           ++E+  + YG +R+    V AV SGDR    +     G   CA      K F F
Sbjct: 99  IFEEYELEYGSDRLEMH-VEAVDSGDRALVVDDLIATGGTLCAAMNLLSKFFSF 151


>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 908

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 261 YREELIN---VDKANNYIGISEEGDKLASLLSRMCLQTAHEGSVLRVRVPPTRHDVIHAW 431
           Y EEL+    V   N Y+ +     ++  ++  +CL  A E + L++   PT    I+A 
Sbjct: 466 YLEELVRRNLVIADNRYLSLEFNFCQMHDMMREVCLSKAKEENFLQIIKDPTSTSTINAQ 525

Query: 432 TSTKT 446
           + +++
Sbjct: 526 SPSRS 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,898
Number of Sequences: 28952
Number of extensions: 223224
Number of successful extensions: 512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)