Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060462.seq
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 202 4e-53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 121 6e-29
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 113 1e-26
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 103 2e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 73 4e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 3e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 60 3e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 47 2e-06
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.27
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.61
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.3
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 7.5
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 10.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 202 bits (492), Expect = 4e-53
Identities = 93/101 (92%), Positives = 96/101 (95%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
Query: 434 REKMTQIMFETFNTXAMYVAIQAVLSLYASGRTTGIVLDSG 556
REKMTQI+FETFN A YVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSG 156
Score = 113 bits (273), Expect = 1e-26
Identities = 50/60 (83%), Positives = 56/60 (93%)
Frame = +3
Query: 93 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVG ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 121 bits (292), Expect = 6e-29
Identities = 51/114 (44%), Positives = 83/114 (72%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 394
+ G + ++ +EA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 395 VLLTEAPLNPKANREKMTQIMFETFNTXAMYVAIQAVLSLYASGRTTGIVLDSG 556
+LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSG
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSG 156
Score = 48.0 bits (109), Expect = 9e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 99 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 203
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 113 bits (273), Expect = 1e-26
Identities = 52/102 (50%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKA 430
+EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL
Sbjct: 60 SEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIR 119
Query: 431 NREKMTQIMFETFNTXAMYVAIQAVLSLYASGRTTGIVLDSG 556
N+EK+ + +ET N A+ ++Q VL+LYAS RTTGIVL+ G
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECG 161
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 103 bits (246), Expect = 2e-23
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 9/110 (8%)
Frame = +2
Query: 254 NEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 430
N+A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP
Sbjct: 78 NDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPE 137
Query: 431 NREKMTQIMFETFNTXAMYVAIQAVLSLYASGRT--------TGIVLDSG 556
NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSG
Sbjct: 138 NRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSG 187
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGMR 260
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 72.5 bits (170), Expect = 4e-14
Identities = 34/92 (36%), Positives = 51/92 (55%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 460
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 461 ETFNTXAMYVAIQAVLSLYASGRTTGIVLDSG 556
E+ A Y+A Q + +ASG+ T ++D G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 197
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.1 bits (154), Expect = 3e-12
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 391
RD + L N+ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 392 PVLLTEAPLNPKANREKMTQIMFETFNTXAMYVAIQAVLSLYASGR--TTGIVLDSG 556
P+ +TE NP R MT+++FE +N ++ I + S Y + + ++GIVL+ G
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLG 173
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 206
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 59.7 bits (138), Expect = 3e-10
Identities = 24/84 (28%), Positives = 49/84 (58%)
Frame = +2
Query: 305 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTXAM 484
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + A
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 485 YVAIQAVLSLYASGRTTGIVLDSG 556
Y+ QAV +A+ ++T +++D G
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIG 157
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 197
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 47.2 bits (107), Expect = 2e-06
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 463
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 464 TFNTXAMYVAIQAVLSLYASGRTTGIVLDSG 556
+A + ++ LYA G G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.27
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 253 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 92
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 28.7 bits (61), Expect = 0.61
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 356 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNT 475
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NT
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENT 1440
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 398 LLTEAPLNPKANREKMTQIMFETFN 472
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 232 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 140
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 138 TYRSHCLLPTRQLLRRTS*ISEI 70
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 252 LHKSPSVPYRPSRPDGGAFPRSRGTR 175
+ K+PS PY SRP A S TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 333 MSSQLVTIPCSMGYLRVRIPLLLCASFLHKSPSVPYRPSR 214
+SS +IP +L+ I + L + F + PS+ Y+ SR
Sbjct: 157 VSSSFDSIPAIARFLQREIEVQLVSLFQEELPSIIYKMSR 196
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAG 158
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 156 GDDAPRAVFPSIVGRPRHQGVMVGM 230
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,278
Number of Sequences: 5004
Number of extensions: 51997
Number of successful extensions: 157
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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