Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060461.seq
         (554 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.33 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.1  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   5.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   7.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.5  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 313 GCKVGTC*ASLXSFNMCKSVSSLHCQ 236
           GCK G C   + S  MC + S+L  Q
Sbjct: 139 GCKKGVCTMEINSDTMCVTFSNLGIQ 164


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 230 RNKSLPDFXHXPRNPNTPV 174
           +NKSL  F    RN +TP+
Sbjct: 416 QNKSLAAFDFVARNSDTPI 434


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 373 CPPRSNVVKRILP 335
           CPP+   +KR+LP
Sbjct: 53  CPPQGVDLKRVLP 65


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
          protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 77 VICYVVKWII 48
          VICYV  W I
Sbjct: 26 VICYVASWAI 35


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +2

Query: 416 GRHSVPGRRVXTGXVCRSPRLN*TRCSLNEN 508
           G  S PG ++    +   P  N  + + NE+
Sbjct: 129 GNQSTPGIKLSINIILSDPNTNKLKLNTNES 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,437
Number of Sequences: 336
Number of extensions: 1827
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)