Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060461.seq
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0154 + 13269335-13269463,13269597-13269728,13270704-13271024 97 1e-20
12_02_0764 - 22973675-22973995,22975626-22975757,22977074-22977202 93 1e-19
01_01_1068 - 8413269-8413589,8414011-8414262,8417472-8417603,841... 76 2e-14
06_01_0853 + 6486027-6486158,6486561-6486692,6486974-6486978,648... 66 2e-11
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81... 40 0.002
07_01_0842 + 6840943-6841288,6841800-6841970,6842762-6842832,684... 38 0.004
05_05_0295 - 23912502-23912507,23912631-23912712,23913020-239131... 38 0.004
03_06_0420 + 33794045-33794192,33794831-33794901,33795093-337952... 38 0.004
01_06_1108 + 34574299-34574446,34575000-34575070,34575246-345753... 38 0.004
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 38 0.004
10_08_1062 + 22626262-22626318,22626404-22626494,22626601-226267... 38 0.005
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24... 37 0.009
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22... 37 0.009
02_05_0413 + 28773869-28773925,28774045-28774135,28774515-287746... 37 0.012
03_02_0046 - 5255513-5255630,5255715-5255876,5256579-5256733,525... 36 0.029
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147... 32 0.27
08_01_0921 + 9075409-9075511,9075606-9075689,9075744-9075806,907... 32 0.35
07_03_0064 + 12995669-12995904,12996299-12996533,12998223-129983... 29 1.9
12_02_0852 - 23690015-23690545 29 2.5
02_05_0639 - 30552148-30552265,30552362-30552523,30553177-305532... 29 2.5
02_02_0711 - 13180406-13180423,13180483-13180563,13181026-131811... 27 7.6
>01_03_0154 + 13269335-13269463,13269597-13269728,13270704-13271024
Length = 193
Score = 96.7 bits (230), Expect = 1e-20
Identities = 57/116 (49%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L G + TLLHMLKD RL QH PT HPTS LSIG ++F FDLGGHQ AR
Sbjct: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
Query: 387 RXXRDXFPAVDAIVFLVDACXPAXSAGVQG*TRLVAH*TRTSVTAL-WLXLGNKID 551
R +D + VDA+V+LVDA A + L A + S+ A+ +L LGNKID
Sbjct: 79 RVWKDYYAKVDAVVYLVDAYDKERFA--ESKKELDALLSDDSLAAVPFLILGNKID 132
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +1
Query: 154 MFILDWFTGVLGFLGLWXKSGKLLFLGLDNAGKT 255
MF+ DWF GVL LGLW K K+LFLGLDNAGKT
Sbjct: 1 MFLWDWFYGVLASLGLWQKEAKILFLGLDNAGKT 34
>12_02_0764 - 22973675-22973995,22975626-22975757,22977074-22977202
Length = 193
Score = 93.5 bits (222), Expect = 1e-19
Identities = 59/132 (44%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Frame = +3
Query: 168 LVHWSVGISWXMX---KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIG 338
LV W G+ + K + L G + TLLHMLKD RL QH PT +PTS LSIG
Sbjct: 3 LVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG 62
Query: 339 SMRFTTFDLGGHQQARRXXRDXFPAVDAIVFLVDACXPAXSAGVQG*TRLVAH*TRTSV- 515
++F FDLGGHQ ARR +D + VDA+V+LVDA + + L A + S+
Sbjct: 63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFS--ESKKELDALLSDDSLA 120
Query: 516 TALWLXLGNKID 551
T +L LGNKID
Sbjct: 121 TVPFLILGNKID 132
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = +1
Query: 154 MFILDWFTGVLGFLGLWXKSGKLLFLGLDNAGKT 255
MF++DWF GVL LGLW K K+LFLGLDNAGKT
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKT 34
>01_01_1068 -
8413269-8413589,8414011-8414262,8417472-8417603,
8417684-8417812
Length = 277
Score = 75.8 bits (178), Expect = 2e-14
Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Frame = +3
Query: 168 LVHWSVGISWXMX---KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIG 338
LV W G+ + K + L G + TLLHMLKD RL QH PT +PTS LSIG
Sbjct: 3 LVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG 62
Query: 339 SMRFTTFDLGGHQQARRXXRDXF 407
++F FDLGGHQ ARR +D +
Sbjct: 63 KIKFKAFDLGGHQIARRVWKDYY 85
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = +1
Query: 154 MFILDWFTGVLGFLGLWXKSGKLLFLGLDNAGKT 255
MF++DWF GVL LGLW K K+LFLGLDNAGKT
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKT 34
>06_01_0853 +
6486027-6486158,6486561-6486692,6486974-6486978,
6487948-6488017,6489456-6489776
Length = 219
Score = 65.7 bits (153), Expect = 2e-11
Identities = 36/76 (47%), Positives = 44/76 (57%)
Frame = +3
Query: 180 SVGISWXMXKVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTF 359
S+G+ W K + L G + TL +ML LA H PT HPTS LSIG +RF F
Sbjct: 14 SIGL-WQ--KEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEELSIGRIRFKAF 70
Query: 360 DLGGHQQARRXXRDXF 407
DLGGH+ ARR RD +
Sbjct: 71 DLGGHRIARRVWRDYY 86
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 157 FILDWFTGVLGFLGLWXKSGKLLFLGLDNAGKT 255
F+LDWF VL +GLW K K+LFLGLDNAGKT
Sbjct: 3 FLLDWFYDVLASIGLWQKEAKILFLGLDNAGKT 35
>06_01_0098 +
818374-818427,818537-818627,818753-818868,818962-819087,
819175-819357
Length = 189
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L+ G + T+L+ L + +PT+ + ++ FT +D+GG + R
Sbjct: 15 KEMKVLMLGLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKNVAFTVWDVGGQDKLR 74
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F DA++++VD+
Sbjct: 75 PLWRQYFRNADALIYVVDS 93
>07_01_0842 +
6840943-6841288,6841800-6841970,6842762-6842832,
6843068-6843187,6843654-6843772,6844045-6844126,
6844254-6844259
Length = 304
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L+ G + T+L+ LK + +PT+ + ++ FT +D+GG + R
Sbjct: 139 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 198
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F ++F+VD+
Sbjct: 199 PLWRHYFQNTQGLIFVVDS 217
>05_05_0295 -
23912502-23912507,23912631-23912712,23913020-23913138,
23913480-23913599,23913927-23913997,23914525-23914672
Length = 181
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L+ G + T+L+ LK + +PT+ + ++ FT +D+GG + R
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F ++F+VD+
Sbjct: 76 PLWRHYFQNTQGLIFVVDS 94
>03_06_0420 +
33794045-33794192,33794831-33794901,33795093-33795212,
33795466-33795584,33795775-33795856,33795984-33795989
Length = 181
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L+ G + T+L+ LK + +PT+ + ++ FT +D+GG + R
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F ++F+VD+
Sbjct: 76 PLWRHYFQNTQGLIFVVDS 94
>01_06_1108 +
34574299-34574446,34575000-34575070,34575246-34575365,
34575471-34575488,34575708-34575826,34576244-34576325,
34576537-34576542
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L+ G + T+L+ LK + +PT+ + ++ FT +D+GG + R
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F ++F+VD+
Sbjct: 76 PLWRHYFQNTQGLIFVVDS 94
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L+ G + T+L+ LK + +PT+ + ++ FT +D+GG + R
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F ++F+VD+
Sbjct: 76 PLWRHYFQNTQGLIFVVDS 94
>10_08_1062 +
22626262-22626318,22626404-22626494,22626601-22626716,
22627035-22627094,22627204-22627269,22627726-22627914
Length = 192
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + ++ G + T+L+ L + VPT+ + ++ FT +D+GG ++ R
Sbjct: 16 KEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLR 75
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F DA++++VD+
Sbjct: 76 PLWRHYFNNTDALIYVVDS 94
>12_01_0028 +
242016-242467,242547-242918,243027-243182,245007-245089,
245159-245222,245704-246001,246616-246726,247059-247100
Length = 525
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 119 VINIVQFNYIQKCLSSTGSLECWDFLXY 202
VI QFN + C+S+TGSLE W+ L Y
Sbjct: 342 VITFCQFNIDEPCISATGSLELWNILKY 369
>11_01_0029 +
226459-226973,227053-227424,227533-227688,229513-229595,
229665-229728,230209-230596
Length = 525
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 119 VINIVQFNYIQKCLSSTGSLECWDFLXY 202
VI QFN + C+S+TGSLE W+ L Y
Sbjct: 363 VITFCQFNIDEPCISATGSLELWNILKY 390
>02_05_0413 +
28773869-28773925,28774045-28774135,28774515-28774630,
28775627-28775686,28775767-28775832,28776499-28776693
Length = 194
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 255 TLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQARRXXRDXFPAVDAIVFL 434
T+L+ L + VPT+ + ++ FT +D+GG ++ R R F D ++++
Sbjct: 32 TILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 91
Query: 435 VDA 443
VD+
Sbjct: 92 VDS 94
>03_02_0046 -
5255513-5255630,5255715-5255876,5256579-5256733,
5256811-5256892,5257790-5257827
Length = 184
Score = 35.5 bits (78), Expect = 0.029
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +3
Query: 297 VPTLHPTSXXLSIGSMRFTTFDLGGHQQARRXXRDXFPAVDAIVFLVDACXPAXSAGVQG 476
+PT+ ++ G++ +DLGG + R AV AIV++VDA A +
Sbjct: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADRENMAIAK- 107
Query: 477 *TRLVAH*TRTSVTAL-WLXLGNKIDK 554
+ L ++ S+T + L +GNKIDK
Sbjct: 108 -SELHDLLSKPSLTGIPLLVIGNKIDK 133
>02_01_0226 +
1476529-1476585,1477207-1477297,1478247-1478362,
1478834-1478893,1479000-1479065,1479847-1480047
Length = 196
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +3
Query: 255 TLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQARRXXRDXFPAVDAIVFL 434
T+L+ L + VPT+ + ++ FT +D+GG ++ R + DA++++
Sbjct: 32 TILYRLHMGEVLSTVPTVGFNVEKVQYKNVVFTVWDVGGQEKLRPLWKMYLSNSDALIYV 91
Query: 435 VDA 443
VD+
Sbjct: 92 VDS 94
>08_01_0921 +
9075409-9075511,9075606-9075689,9075744-9075806,
9077163-9077181,9078227-9078338,9078902-9078949,
9079372-9079502,9079673-9079757,9079776-9079784
Length = 217
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 339 SMRFTTFDLGGHQQARRXXRDXFPAVDAIVFLVDA 443
+++F +DLGG R R FP AI+++VD+
Sbjct: 75 NIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDS 109
>07_03_0064 +
12995669-12995904,12996299-12996533,12998223-12998384,
12999446-12999566,13000095-13001608
Length = 755
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 453 PVHTRRPGTLWRPPRGXSRATXDAPADA 370
P+ +RPG L P RG A D P +A
Sbjct: 200 PIRRKRPGRLSEPQRGTLEAVVDKPIEA 227
>12_02_0852 - 23690015-23690545
Length = 176
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 456 WPVHTRRPGTLWRPPRGXSRATXDAPA 376
W V RRP + PPRG A +APA
Sbjct: 87 WRVPRRRPSSRTSPPRGRRGALVNAPA 113
>02_05_0639 -
30552148-30552265,30552362-30552523,30553177-30553298,
30553515-30553596,30554407-30554699
Length = 258
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 336 GSMRFTTFDLGGHQQARRXXRDXFPAVDAIVFLVDACXPAXSAGVQG*TRLVAH*TRTSV 515
G++ +DLGG ++ R V AI+++VDA S + + L T+ S+
Sbjct: 136 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA-DRDSIPIAK-SELHDLLTKQSL 193
Query: 516 TAL-WLXLGNKIDK 554
+ L LGNKIDK
Sbjct: 194 AGIPLLVLGNKIDK 207
>02_02_0711 -
13180406-13180423,13180483-13180563,13181026-13181188,
13182096-13182206,13182365-13182429
Length = 145
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 300 PTLHPTSXXLSIGSMRFTTFDLGGHQQARRXXRDXFPAVDAIVFLVDA 443
PTL + +D+GG + R R+ F D +V++VD+
Sbjct: 46 PTLGFNIKTIKYHKYSLNIWDIGGQKTIRSYWRNYFEQTDGLVWVVDS 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,129,274
Number of Sequences: 37544
Number of extensions: 205483
Number of successful extensions: 468
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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