Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060461.seq
(554 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_214| Best HMM Match : Arf (HMM E-Value=0) 89 2e-18
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 40 0.001
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 39 0.003
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 38 0.004
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 36 0.017
SB_18358| Best HMM Match : Arf (HMM E-Value=0) 29 1.9
SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36) 29 2.6
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
>SB_214| Best HMM Match : Arf (HMM E-Value=0)
Length = 148
Score = 89.4 bits (212), Expect = 2e-18
Identities = 49/90 (54%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Frame = +3
Query: 285 LAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQARRXXRDXFPAVDAIVFLVD-ACXPAXS 461
+AQHVPTLHPTS LS+G MRFTTFDLGGH+QARR +D FPAV+ IVF++D A +
Sbjct: 1 MAQHVPTLHPTSEELSMGGMRFTTFDLGGHRQARRIWKDYFPAVNGIVFIIDCADFERLA 60
Query: 462 AGVQG*TRLVAH*TRTSVTALWLXLGNKID 551
+ L+A +S L LGNKID
Sbjct: 61 ESKKELDSLLADEQLSSCPV--LILGNKID 88
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 246 REDTLLHMLKDXRLAQHVPTLHPTSXXLS-IGSMRFTTFDLGGHQQARRXXRDXFPAVDA 422
R+ T+L+ LK VPT+ +S ++ F+ +D+GG + RR R F +
Sbjct: 121 RKTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDKIRRLWRHYFQGAEG 180
Query: 423 IVFLVDA 443
I+F+VD+
Sbjct: 181 IIFVVDS 187
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +3
Query: 255 TLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQARRXXRDXFPAVDAIVFL 434
T+L+ LK + VPTL ++ ++ FT +D+GG + R R + I+F+
Sbjct: 11 TILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIRALWRVYYQGCQGIIFV 70
Query: 435 VDA 443
VD+
Sbjct: 71 VDS 73
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L+ G + T+L+ LK + +PT+ + ++ FT +D+GG + R
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F ++F+VD+
Sbjct: 76 PLWRHYFQNTQGLIFVVDS 94
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +3
Query: 207 KVRQALVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQAR 386
K + L+ G + T+L+ LK + +PT+ + ++ FT +D+GG + R
Sbjct: 16 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVESVEYKNISFTVWDVGGQDKIR 75
Query: 387 RXXRDXFPAVDAIVFLVDA 443
R F ++++VD+
Sbjct: 76 PLWRHYFQNTQGLIYVVDS 94
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +3
Query: 222 LVSGX*QCREDTLLHMLKDXRLAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQARRXXRD 401
L+ G + T+L+ LK +PT+ + +++FT +D+GG + R R
Sbjct: 94 LMVGLDAAGKTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDKIRLLWRL 153
Query: 402 XFPAVDAIVFLVDA 443
F ++F+VD+
Sbjct: 154 YFQETQGLIFVVDS 167
>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
Length = 214
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 342 MRFTTFDLGGHQQARRXXRDXFPAVDAIVFLVDA 443
+RF +D+GG +Q R + DA++++VD+
Sbjct: 66 IRFKVWDIGGREQNRPLWKAYARQTDAVIYVVDS 99
>SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)
Length = 260
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 168 LVHWSVGISWXMXKVRQALVSGX*QCREDTLLHMLKDXRLAQH-VPTLHPTSXXLSIGSM 344
++ W + W ++ LV G + T ++++ + ++ +PT+ +S G++
Sbjct: 8 ILDWFKSLFWK-EEMELTLV-GLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVSKGNV 65
Query: 345 RFTTFDLGGHQQARRXXRDXFPAVDAIVFLVDA 443
+D+GG + R V+ IV++VDA
Sbjct: 66 TIKVWDIGGQPRFRSMWERYCRGVNCIVYMVDA 98
>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 285 LAQHVPTLHPTSXXLSIGSMRFTTFDLGGHQQARRXXRDXFPAVDAIVFLV 437
L V T + + F FD+GG + R+ F V AI+F V
Sbjct: 175 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV 225
>SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 101 TLPLGLVINIVQFNYI-QKCLSSTGSLECWDFLXYGKSQASSCF 229
TLPL L+ + Y Q C + CW FL +S SCF
Sbjct: 276 TLPLMLIAWVAMKRYRKQNCSYRLFAAVCWCFLRCAESWPPSCF 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,211,261
Number of Sequences: 59808
Number of extensions: 245265
Number of successful extensions: 518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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