Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060460.seq
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    28   0.062
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.1  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   3.1  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   7.1  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 411 MRDPKTLIXHLSTNKEYEFKIEMIDSMYRLAKYAMNVXIMWSQHHIFTFGQLVMSPTDKN 590
           + DP T    L+TN+ YE  +   DS   LA          ++H + T  QL+      N
Sbjct: 144 LSDPNTNKLKLNTNESYELTVLKSDS---LAVRLSAANFFGARHGLETLNQLIWFDEVVN 200

Query: 591 YLSVLWG 611
            L +L G
Sbjct: 201 ELRILHG 207


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 272 YPEEDTPEEIIQRRGVVLSEL 334
           YP E+  EE+ ++ G+ +S++
Sbjct: 257 YPSEEAKEELARKCGITVSQV 277


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 560  TKSKDMMLTPHNXHIHSVFGQTIH 489
            T S    L PH   +  + G TIH
Sbjct: 1409 TNSLTFKLKPHESDVEPIHGYTIH 1432


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 246 YVTTSEECSILKKTLLKKLYSGEV*FFRNCR 338
           Y+ T+  C++LKK  L +L+   + F   C+
Sbjct: 88  YLETTWICTLLKKDKLLELFKRLIHFDTKCQ 118


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 246 YVTTSEECSILKKTLLKKLYSGEV*FFRNCR 338
           Y+ T+  C++LKK  L +L+   + F   C+
Sbjct: 106 YLETTWICTLLKKDKLLELFKRLIHFDTKCQ 136


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 433 IRVLGSLMVXIVXHYIISLHESQYWLYCILKFLQFRKNYTSPLYNFFRS 287
           I VL  L +    +Y    +E  +W    L F++   NY   LYN F S
Sbjct: 107 INVLYVLTLCYAVYYWRQQYED-FWHRYTLSFIE---NYCQFLYNCFHS 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,308
Number of Sequences: 336
Number of extensions: 3142
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)