Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060460.seq
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    75   1e-14
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    34   0.017
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.82 
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    25   7.7  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 33/52 (63%), Positives = 43/52 (82%)
 Frame = +3

Query: 96  KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYV 251
           K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D  ELLQAK ++L  TNM DYV
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYV 65



 Score = 32.7 bits (71), Expect = 0.050
 Identities = 22/94 (23%), Positives = 43/94 (45%)
 Frame = +2

Query: 272 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMXNNXXHEGS*NSYXPSFDK 451
           + +ED      ++R  VL EL EL++ V+ +L +++  D++      +G    +     +
Sbjct: 76  HTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHL----Q 131

Query: 452 QGV*V*N*NDR*HVSFGQIRYECGNYVESASYLY 553
           +   +          F Q +Y CGNY  ++  LY
Sbjct: 132 EHYNITPERIAVLYKFAQFQYNCGNYGGASDLLY 165


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = -2

Query: 596 QIILVSWRHHQLTKSKDMMLTPHNXHIHSVFGQTIHAIDHFNFKLILLVCRKMXYKSFRI 417
           Q++ V W+HHQ      ++ T    H   +FGQ I AID ++ KL  +  +    +SF  
Sbjct: 332 QLLEVPWQHHQC---HPLIKT----HFFGIFGQKIDAIDFYSAKLYKISQQIENARSFDY 384

Query: 416 PHGXNCXSLHHLFA*VSILALLHLE 342
           P            A   I+A  H++
Sbjct: 385 PTTGQAFITFESMATAQIVAQTHID 409


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 111  FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 230
            F I +YL  +L+ P LEF L A E   Q  +  A  ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/69 (23%), Positives = 27/69 (39%)
 Frame = +2

Query: 248 CYYIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMXNNXXHEGS*N 427
           C     MLYP ED  + ++ R      +  E+    +     +Q  +V      H+ S +
Sbjct: 7   CIECNNMLYPREDKVDRVL-RLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTD 65

Query: 428 SYXPSFDKQ 454
              P  DK+
Sbjct: 66  PTLPRSDKE 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,846
Number of Sequences: 5004
Number of extensions: 53085
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)