Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060460.seq
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 71 1e-12
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 59 4e-09
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 50 2e-06
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 29 2.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.5
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 28 6.0
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 70.5 bits (165), Expect = 1e-12
Identities = 48/180 (26%), Positives = 83/180 (46%)
Frame = +3
Query: 93 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTTSEECS 272
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS TNM+DY +
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHKSL 61
Query: 273 ILKKTLLKKLYSGEV*FFRNCRNFKMQ*SQY*DSCKEMM**XTIXTMRDPKTLIXHLSTN 452
+ + R + + + +R K H+ +
Sbjct: 62 HDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQ---LVQELRPDKQYNLHMLQD 118
Query: 453 KEYEFKIEMIDSMYRLAKYAMNVXIMWSQHHIFTFGQLVMSPTDKNYLSVLWGKLASEIL 632
+ ++ E I+++Y+ AK+ + +S ++ + + + LS LWGKLA+EIL
Sbjct: 119 R-FQIGPEQIETLYQFAKFQFDCG-NYSDAAVYLYQYRALCTNSERSLSALWGKLAAEIL 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/99 (22%), Positives = 48/99 (48%)
Frame = +2
Query: 257 IRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMXNNXXHEGS*NSYX 436
I + L+ ++ P+++++RR V+S L+ L +A P++ +Q ++ + Y
Sbjct: 57 IHKSLHDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQLVQELRPDK----QYN 112
Query: 437 PSFDKQGV*V*N*NDR*HVSFGQIRYECGNYVESASYLY 553
+ + F + +++CGNY ++A YLY
Sbjct: 113 LHMLQDRFQIGPEQIETLYQFAKFQFDCGNYSDAAVYLY 151
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/52 (48%), Positives = 37/52 (71%)
Frame = +3
Query: 93 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDY 248
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L TNM+DY
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDY 53
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 474 EMIDSMYRLAKYAMNVX-IMWSQHHIFTFGQLVMSPTDKNYLSVLWGKLASEIL 632
+ I+++Y+ AK+ + ++ ++ + L + + LS LWGKLA+EIL
Sbjct: 101 DQIETLYQYAKFQFDCGNYSFAAQYLHQYRALCTNI--ERSLSALWGKLAAEIL 152
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Frame = +3
Query: 93 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSK-TNMIDY 248
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + TNM+DY
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDY 56
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 269 LYPEEDTPEEIIQRRGVVLSELQELQDAVEPV 364
L P+EDT E ++RRGV L+E + +AV+ V
Sbjct: 392 LLPKEDTYVEFLKRRGVPLTERECSTNAVDIV 423
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 1 RHEITGCWFLPTTCVSIFIRIHENKLST*VTQNLI----*RLK*DSILIGISCFLY*NS* 168
RH GC LP + + F+R+ E+ LST QN+I R S+ +SC L
Sbjct: 104 RH-FEGCPVLPLSLIQHFLRVCEHWLSTGNNQNIILLHCERGGWPSLAFMLSCLLIFKKL 162
Query: 169 QQRRHMT 189
Q H T
Sbjct: 163 QSAEHKT 169
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 589 IICRFFGVNWLAKFWVQNWGW 651
++CR+ G N L F V W W
Sbjct: 282 VVCRYIGPNKLRNFCVDIWNW 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,859
Number of Sequences: 37544
Number of extensions: 310885
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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