Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060460.seq
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)                      40   0.002
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     36   0.023
SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 399

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +3

Query: 462 EFKIEMIDSMYRLAKYAMNVXIMWSQHHIFTFGQLVMSPTDKNYLSVLWGKLASEIL 632
           + K EM+D +Y+ AK+               F + +    D N L+ LWGKLASEIL
Sbjct: 59  QIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEIL 115



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = +2

Query: 269 LYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL 367
           LYP+E+ P  ++++R  V+ EL++LQ   EP++
Sbjct: 16  LYPDEEVPTSLVEKRVEVVKELKDLQAQTEPII 48



 Score = 34.3 bits (75), Expect = 0.093
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 497 FGQIRYECGNYVESASYLYFW 559
           F + +YECGNY  +A YLYF+
Sbjct: 71  FAKFQYECGNYSGAAEYLYFY 91


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 477 MIDSMYRLAKYAMNVXIMWSQHHIFTFGQLVMSPTDKNYLSVLWGKLASEIL 632
           M+D +Y+ AK+               F + +    D N L+ LWGKLASEIL
Sbjct: 1   MLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEIL 52



 Score = 34.3 bits (75), Expect = 0.093
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 497 FGQIRYECGNYVESASYLYFW 559
           F + +YECGNY  +A YLYF+
Sbjct: 8   FAKFQYECGNYSGAAEYLYFY 28


>SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 364 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHS 263
           Y+L+CIL+ L+  KNY    +  F   F  ++H+
Sbjct: 57  YFLHCILESLKRGKNYVRIFFADFSKGFDLVDHN 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,735,063
Number of Sequences: 59808
Number of extensions: 389693
Number of successful extensions: 1604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)