Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060460.seq
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 77 2e-14
Z68118-8|CAA92189.2| 289|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical pr... 29 2.3
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 29 4.1
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 29 4.1
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 29 4.1
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 29 4.1
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 29 4.1
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 9.4
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 76.6 bits (180), Expect = 2e-14
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 3/198 (1%)
Frame = +3
Query: 93 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTTSEECS 272
S FDLT ++ +LD HL+ PLLEF+ + YD+ L + ++L+KTNMID V +
Sbjct: 2 STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIETYNGK 61
Query: 273 ILKKTL--LKKLYSGEV*FFRNCRNFKMQ*SQY*DSCKEMM**XTIXTMRDPKT-LIXHL 443
+ + KK E ++ + + + KEMM RD ++ HL
Sbjct: 62 PIPAAIEAKKKQIIKERDELKSKVDSVVAILEI-PEVKEMM---DNNRERDGNVRILEHL 117
Query: 444 STNKEYEFKIEMIDSMYRLAKYAMNVXIMWSQHHIFTFGQLVMSPTDKNYLSVLWGKLAS 623
+ N + F ++M+D++++ +K+ + + +++ D NYL+ L+GKLAS
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLAS 175
Query: 624 EILGTKLGMARSMDLTKL 677
EIL + AR DL KL
Sbjct: 176 EILLQEWEHARD-DLLKL 192
>Z68118-8|CAA92189.2| 289|Caenorhabditis elegans Hypothetical
protein R01E6.7 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 165 LAAKETYDQSELLQAKLEILSKTNMIDYVTTSEECSILKKTLLKKLYS 308
LA YD+ LL+ K++ K M D EC +++ T L ++YS
Sbjct: 162 LAGYPQYDRHRLLRIKMDTSKKLLMYDETDKERECLVVRST-LSEMYS 208
>Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical
protein T16H12.2 protein.
Length = 181
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 266 MLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 361
+LYP++DTP +I++ R L Q+ +D EP
Sbjct: 129 ILYPKKDTPPKILRARRRSLIRAQKKKDFQEP 160
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 620 SQFTPKNRQIILVSWRHHQLTKSKDMMLTPHNXHIHSVFGQTIHAIDH 477
+ T KNRQ W Q+T+ D+++ P + HS + I H
Sbjct: 890 ANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAFDIAH 937
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 620 SQFTPKNRQIILVSWRHHQLTKSKDMMLTPHNXHIHSVFGQTIHAIDH 477
+ T KNRQ W Q+T+ D+++ P + HS + I H
Sbjct: 890 ANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAFDIAH 937
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 620 SQFTPKNRQIILVSWRHHQLTKSKDMMLTPHNXHIHSVFGQTIHAIDH 477
+ T KNRQ W Q+T+ D+++ P + HS + I H
Sbjct: 925 ANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAFDIAH 972
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 620 SQFTPKNRQIILVSWRHHQLTKSKDMMLTPHNXHIHSVFGQTIHAIDH 477
+ T KNRQ W Q+T+ D+++ P + HS + I H
Sbjct: 890 ANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAFDIAH 937
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 620 SQFTPKNRQIILVSWRHHQLTKSKDMMLTPHNXHIHSVFGQTIHAIDH 477
+ T KNRQ W Q+T+ D+++ P + HS + I H
Sbjct: 890 ANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAFDIAH 937
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +2
Query: 236 HDRLCYYIRRMLYPE-EDTPEEIIQRRGVVLS----ELQELQDAVEPVLRLM 376
HD L YY R++ P DT E++ + + ++ +Q L++ ++ + RLM
Sbjct: 571 HDALFYYFSRLVAPVWNDTICEVLNGKQLTITFEPESIQSLKEEIQKLARLM 622
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,901,886
Number of Sequences: 27780
Number of extensions: 293196
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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