Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060459.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    29   0.63 
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    27   1.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.5  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   3.3  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   4.4  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   5.8  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   5.8  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   7.7  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   7.7  

>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 297 SSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPAPDXVPERRGNRS 142
           S R P  ST+  +SHS  S    R S+GT      R + AP   P+   N +
Sbjct: 146 SPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNET 197


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 96  QRIKTRKRDEKEKYDPNGFRDALVXGLERAGGDLDAAYKYLDSAGSKLD 242
           QR    K+D+KEK +    ++A V  +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/64 (25%), Positives = 24/64 (37%)
 Frame = -1

Query: 342 LVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPAPDXVP 163
           L +   PS+D   P S  PP+ S S   +    S     P+      +   +  AP   P
Sbjct: 45  LTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYP 104

Query: 162 ERRG 151
            + G
Sbjct: 105 PQGG 108


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 554 GGTHPLPIHSAVMRAT*CAVRDRSLSSRPEPFSFPLRTFFPST 426
           GGT  LP+ +A      C + D   S+   P  FP+    P++
Sbjct: 222 GGTVLLPVDAASRVLELCCILDNHWSASQPPLPFPILFLSPTS 264


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 212 VPRLGRIKTRLPTLCEVIFDVLIAGGLLLPGGSV 313
           +P L ++KTR PT+   +  V I+ G ++P  +V
Sbjct: 523 LPVLEKVKTREPTVVMGMVTVYISAGAIIPEETV 556


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 316 RHRTARQQQAASNEYIEYDFA 254
           R RT  +Q   + +YIEYDF+
Sbjct: 43  RKRTFDEQSEITKDYIEYDFS 63


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 369 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 268
           SSL + M V    DSP ++ E  G S  P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 303 PGSSRPPAMSTSNMTSHSVGSRVLIRPS 220
           P SSR    S  N +S S+G+ VL RP+
Sbjct: 468 PESSRFGTPSDPNSSSQSLGNEVLSRPN 495


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 417 RXSFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 265
           + S     +    V  S+L +  +VL L   P     P G    PA++TSN
Sbjct: 69  KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,770
Number of Sequences: 5004
Number of extensions: 60505
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)