Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060459.seq
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 54 8e-08
05_05_0007 - 21465506-21466273 30 1.5
03_05_0600 + 26021863-26022469,26022562-26022992 30 1.5
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 30 1.5
11_05_0026 - 18462749-18462841,18463642-18463726,18463989-184640... 30 2.0
06_01_0707 + 5136210-5136584 30 2.0
04_04_0169 + 23266110-23266439,23267208-23267288,23267399-232675... 30 2.0
01_06_1226 - 35518981-35519295,35519876-35520745 30 2.0
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 29 2.6
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 6.0
03_03_0100 + 14411807-14412100 28 6.0
12_02_0749 - 22758317-22760407 28 7.9
09_04_0350 + 16899076-16900164 28 7.9
08_02_1286 - 25882773-25883771 28 7.9
06_01_0635 + 4623223-4623380,4623529-4623724,4624379-4624894,462... 28 7.9
02_05_0472 + 29314486-29315040,29315170-29315319,29317439-293177... 28 7.9
02_04_0635 - 24646603-24647337 28 7.9
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 54.4 bits (125), Expect = 8e-08
Identities = 32/79 (40%), Positives = 44/79 (55%)
Frame = +3
Query: 30 LHNLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVXGLERAGGDLDAAY 209
L +L +S+ C EKP L GQRIKTRKR+ DP F DA+V GDL+
Sbjct: 57 LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113
Query: 210 KYLDSAGSKLDYRRYAKSY 266
K ++S S L++ RY ++
Sbjct: 114 KSIES--SDLNFSRYGDTF 130
>05_05_0007 - 21465506-21466273
Length = 255
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 339 PTPASSPPMRIWTPCEISNRYS*NXCVGTSTWKKCSKRK*KRFWST*KASIPNSASSGAH 518
P PA++PP +W C+ +S S +K F + ++S NS++ H
Sbjct: 26 PPPAATPPAWMWPSCKHPRAHSFRSPSAASA-AAAAKTIASIFLDSGESSFANSSARMHH 84
Query: 519 DCTVD 533
DC D
Sbjct: 85 DCASD 89
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 324 PSIDTEPPGSSRPPA 280
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +1
Query: 430 LGKNVRRGNE--KGSGLLERLRSRTAHQV 510
LG+ +RG E +GSGLLERL + H+V
Sbjct: 23 LGRYTKRGKEDLRGSGLLERLGNACVHRV 51
>11_05_0026 -
18462749-18462841,18463642-18463726,18463989-18464021,
18464278-18464411
Length = 114
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 306 PPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRH 187
PP R P S+++ TS V R+L RPS R D H
Sbjct: 13 PPQRRRNPLPSSASTTSEEVFGRLLQRPSFRRSRAEFDIH 52
>06_01_0707 + 5136210-5136584
Length = 124
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 288 PPAMSTSNMTSHSV-GSRVLIRPSLGTCRLRRDRHRPAP 175
P S ++T V G RVL+ PS GT LRR RP P
Sbjct: 55 PGGKSGDHVTGGRVSGGRVLLSPS-GTSSLRRSHRRPPP 92
>04_04_0169 +
23266110-23266439,23267208-23267288,23267399-23267538,
23267815-23268070
Length = 268
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 500 AVRDRSLSSRPEPFSFPLRTFFPSTCTYAXVSR 402
AV D ++ PF +PL FP C YA +SR
Sbjct: 65 AVGDLAMGVVHHPFYYPLLLGFPLACLYAWLSR 97
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 416 AXVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 285
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 375 SISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLG 214
S+S A K + L +G P ++ E PG S P HSV S +I LG
Sbjct: 22 SLSGPAAKSRRLDIGLPPIMEEETPGPSMPFGHEMLGEEIHSVVSMPIIEDMLG 75
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 433 GKNVRRGNEKGSGLLERLRSRTAHQVARMTALWIGNGCVPP 555
G+N+R+G + G + SRT T L +GN VPP
Sbjct: 228 GQNIRKGKQPGKAGTQGQLSRTVEHDPSHT-LQVGNAQVPP 267
>03_03_0100 + 14411807-14412100
Length = 97
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 604 PGCPSADVRSPGPAARMEARIRYRSTVQSCAPLDALF 494
PG P +PGP ++M+ + R R S +DA F
Sbjct: 56 PGAPRKRRAAPGPVSQMQEQHRQRRDFYSGPDVDAFF 92
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 359 RRRCRCWSWAIRRPSTPNR 303
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -2
Query: 392 RNFAWCPYPHWRRRCRCWSW 333
R W + WR+R CW W
Sbjct: 245 RRRTWRQHGEWRQRSGCWQW 264
>08_02_1286 - 25882773-25883771
Length = 332
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -1
Query: 351 MQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGT 211
+ V+VL +PS + SS PPA++ S S+ SR L PS+ T
Sbjct: 78 LAVVVLWSNPSTP-DSLLSSFPPAVTLHRTASASLNSRFLPHPSIRT 123
>06_01_0635 +
4623223-4623380,4623529-4623724,4624379-4624894,
4626212-4626276,4626387-4626453
Length = 333
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -1
Query: 369 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRD 193
S + + V++L D+P++ T+ S++ S+S S S G + +CR+ D
Sbjct: 215 SGIDDSEDVVILEDTPNLPTQLGKSTKDGFSSSSENPSTSSGFPTAAQNGSSSCRITTD 273
>02_05_0472 +
29314486-29315040,29315170-29315319,29317439-29317741,
29317823-29317933,29318622-29318732,29318760-29318828
Length = 432
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 440 FFPSTCTYAXVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNR 303
FFP T TY+ V + VR P P R W ++ S P R
Sbjct: 271 FFPRTRTYSWVDMLLVRPIEEYPLPLVNGTHRKWRKLVKDLSIPRR 316
>02_04_0635 - 24646603-24647337
Length = 244
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +1
Query: 256 RSHIRCTHCWRPAAAGRFGVDGRRIAQ---DQHLHLLRQ*GYGHHAKFRTGIRETXA*VQ 426
RS +R T C+ P G +A +Q + G G + TG+R +
Sbjct: 105 RSRVRGTDCYEPGTTVEVNYHGVLLASGPVEQLCARATKTGRGRAVAWGTGVRLPGFVLD 164
Query: 427 VLGKNVRRGNEKGSG 471
L +VRRG + +G
Sbjct: 165 ALVSDVRRGGVEATG 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,098,534
Number of Sequences: 37544
Number of extensions: 483274
Number of successful extensions: 1699
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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