Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060459.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    87   2e-17
SB_12807| Best HMM Match : Extensin_2 (HMM E-Value=0.56)               30   1.5  
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 30   2.0  
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 30   2.0  
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)                  28   6.1  
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    28   8.1  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
 Frame = +2

Query: 257 EVIFDVLIAGGLLLPGGSVSMDGESP---KTNTCIFSANEDMDTMRNFEQVFVKLXRRYK 427
           E +FDVL A     PGGS+  DG +P   KTN CIF AN D +T+R   Q+  KL  RY+
Sbjct: 50  EFLFDVLFAA----PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYR 105

Query: 428 YLEKMFEEEMKKVLVYLKGFDPEQRIK 508
           YL+K +E+EM K+L++LKGF  E+R K
Sbjct: 106 YLQKSYEDEMNKILLFLKGFTDEEREK 132



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
 Frame = +3

Query: 123 EKEKYDPNGFRDALVXGLERA---GGDLDAAYKYLDSAGSKLDYRRYAK 260
           EKEK+ P GFRDA++ GL      G DL+   K+LD++G KL+YR Y +
Sbjct: 2   EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGE 50


>SB_12807| Best HMM Match : Extensin_2 (HMM E-Value=0.56)
          Length = 430

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 470 PEPFSFPLRTFFPSTCTYAXVSRIPVRNFAWCPYPHW 360
           P+P  FP  +  P    Y  ++RIP+ + A   YPHW
Sbjct: 317 PDPKRFP--SGIPPLAQYVSINRIPIGSLA--AYPHW 349


>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 609

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 100 GSRPEKEMRKRSMTRTVSATLWYXVWSGPVAISTQPTST*TRP--DQNSTT 246
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 366

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 100 GSRPEKEMRKRSMTRTVSATLWYXVWSGPVAISTQPTST*TRP--DQNSTT 246
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 434 EKMFEEEMKKVLVYLK-GFDPEQRIKWR 514
           EK  EEE+KK+  Y K G DP + +KW+
Sbjct: 136 EKKEEEELKKLEEYEKGGRDPSEFLKWQ 163


>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = -1

Query: 426 LYLRXSFTNT-CSKFRMV--SISSLAEKMQVLVLGD---SPSIDTEPPGSSRPPAMSTS 268
           L ++  F+NT CS F ++  SI++   K+ V        +P + T PP  +RPP  STS
Sbjct: 371 LGIKARFSNTNCSTFNILFSSITNPCAKVFVECCNGVTPAPPLGTLPPPGTRPPPPSTS 429


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 408 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 280
           +  + S+ R +++++   ++QV      PSI ++PP    PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169


>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
          Length = 500

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 488 RSLSSRPEPFSFPLRTFFPSTCT---YAXVSRIPVRNFAW 378
           RS+S  P+P+ +P+ T +P   T      VS+  VR + W
Sbjct: 177 RSVSPAPQPYPYPIGTLYPYQPTPVPGVTVSQPKVRGWQW 216


>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 451 LFEHFFQVLVPTXXFHEYLFEISHGVHILIGGEDAG 344
           +F H     VPT  F++Y  EIS  + I +GG   G
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDAL-ISLGGVSQG 174


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 381 MVSISSLAEKMQVLVLGDSPSIDT-EPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGT 211
           ++S+   A K    V+ D    DT + PGS      S S+  S S GSR   +PS+ T
Sbjct: 763 LISMVKEAAKKLKGVIKDGEGNDTKDDPGSESEAKNSASSPPSSSEGSRSETKPSIVT 820


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +3

Query: 93  GQRIKTRKRDEK-----EKYDPNGFRDALVXGLER 182
           G++ K RK DEK     +K+DP+G    LV  LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 336 LGDSPSIDTEPPGSSRPPAMSTSNMTS 256
           L D+P+  + PP S+ P A ST  M+S
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSS 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,165,272
Number of Sequences: 59808
Number of extensions: 497547
Number of successful extensions: 1545
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)