Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060459.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 420 GTSTWKKCSKRK*KRFWST*KASIPNSASSGAH 518
           G   W   +  K KR WS  + S   ++ +G H
Sbjct: 31  GDEKWVVYNNIKRKRSWSRPRESAQTTSKAGIH 63


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 60  MSQKVEKPVLSGQRIKT 110
           M QK+EKPVLS     T
Sbjct: 314 MLQKLEKPVLSSSTTTT 330


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +3

Query: 57  CMSQKVEKPVLSGQRIKTRKRDEKE 131
           C++  +++  +  +R +T++RD+ E
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSE 194


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +3

Query: 57  CMSQKVEKPVLSGQRIKTRKRDEKE 131
           C++  +++  +  +R +T++RD+ E
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSE 194


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 96  DPIILVFLPSDSYNILILTGYVGAFYSFCLV 4
           DP+ +V   +  Y ++ +TG VG   S C+V
Sbjct: 48  DPLYIVLPITVIYAVIFVTGLVGN-VSTCVV 77


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 600 VVXQQMFVHQDQQHGWRHASVTDPQCSHARHL 505
           V  Q   + +D      HASVTD + +  R+L
Sbjct: 412 VTSQYKNIREDDARHIPHASVTDSENTVPRYL 443


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 62  ESEGRKTSIIGSTD 103
           ESE R+ S +GST+
Sbjct: 371 ESENRRNSCLGSTE 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,875
Number of Sequences: 438
Number of extensions: 4804
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)