Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060459.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    50   2e-06
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    49   3e-06
At4g26300.1 68417.m03783 arginyl-tRNA synthetase, putative / arg...    30   1.6  
At5g06839.1 68418.m00773 bZIP family transcription factor contai...    29   2.2  
At3g29375.1 68416.m03690 XH domain-containing protein contains P...    29   2.9  
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i...    29   3.8  
At1g19130.1 68414.m02379 expressed protein                             28   6.6  

>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/65 (46%), Positives = 37/65 (56%)
 Frame = +3

Query: 60  MSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVXGLERAGGDLDAAYKYLDSAGSKL 239
           MS K EKP L G RIKTRKR+     DP  F DA+V       GDL+   K ++S  S L
Sbjct: 1   MSSK-EKPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYHDNAGDLELVAKSIES--SDL 57

Query: 240 DYRRY 254
           ++ RY
Sbjct: 58  NFTRY 62



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/84 (23%), Positives = 36/84 (42%)
 Frame = +2

Query: 257 EVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLXRRYKYLE 436
           ++ F+V+  GG   PG   S +GE  +    +       + +        K+ RR  +L 
Sbjct: 64  DIFFEVIFIGGRTQPGTVKSDEGE--RHTYSVIDCEPKREAILPSVVYIQKILRRKPFLI 121

Query: 437 KMFEEEMKKVLVYLKGFDPEQRIK 508
           K  E   ++ L  L+ F+  +R K
Sbjct: 122 KNLENVTRRFLQSLELFEENERKK 145


>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|P47823
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Oryctolagus
           cuniculus}; contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 31/65 (47%), Positives = 37/65 (56%)
 Frame = +3

Query: 60  MSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVXGLERAGGDLDAAYKYLDSAGSKL 239
           MS K EKP L G RIKTRKR+     DP  F DALV       GDL+   + L+S  S L
Sbjct: 1   MSSK-EKPTLGGTRIKTRKRNIAAPLDPAAFSDALVQIYLDNAGDLELVARSLES--SDL 57

Query: 240 DYRRY 254
           ++ RY
Sbjct: 58  NFSRY 62


>At4g26300.1 68417.m03783 arginyl-tRNA synthetase, putative /
           arginine--tRNA ligase, putative similar to SP|P37880
           Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA
           ligase) (ArgRS) {Cricetulus longicaudatus}; contains
           Pfam profiles PF00750: arginyl-tRNA synthetase, PF03485:
           arginyl-tRNA synthetase N-terminal domain
          Length = 642

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 395 QVFVKLXRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKW 511
           QVF K  +    L++ F+E+ ++ +V L+G DP  R  W
Sbjct: 260 QVFYKASKHKFDLDEAFKEKAQQAVVRLQGGDPVYRKAW 298


>At5g06839.1 68418.m00773 bZIP family transcription factor contains
           Pfam profile: PF00170 bZIP transcription factor
          Length = 417

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = -1

Query: 300 GSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRL--RRDRH-RPAPDXVPERRGNRSGHTS 130
           G   PP+ + S +  H     + +RP   T  +   +  H  P P     + GNR G  S
Sbjct: 47  GHHDPPSTAPSPLHHHHTTQNLAMRPPTSTLNIFPSQPMHIEPPPSSTHNKEGNRKGLAS 106

Query: 129 LSH 121
             H
Sbjct: 107 SDH 109


>At3g29375.1 68416.m03690 XH domain-containing protein contains Pfam
           profile: PF03469: XH domain
          Length = 335

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 342 LVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLG 214
           L+ G SPSI     GSS     S+++ T+H+  S    +PSLG
Sbjct: 69  LLFGSSPSI-FGATGSSPSSLPSSASTTTHATSSVTTTQPSLG 110


>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
           identical to Homeobox protein LUMINIDEPENDENS
           (Swiss-Prot:Q38796) [Arabidopsis thaliana]
          Length = 953

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 333 PRPTPASSPPMRIWTPCEISNRYS*NXCVGTSTWKKCSK-RK*KRFW-ST*KASIPNSAS 506
           P PTP+++P M  W    I N +S    VGT+  +  ++ R     W  T + SIP  A 
Sbjct: 753 PSPTPSTNPGMSGWGQEGIRNPFSRQNQVGTAVARSGTQLRVGSMQWHQTNEQSIPRHAP 812

Query: 507 S 509
           S
Sbjct: 813 S 813


>At1g19130.1 68414.m02379 expressed protein
          Length = 187

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 236 TRLPTLCEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLX 415
           ++LP   +V   V  +   LLP GSVS     P   T  F   E +  +R+     ++  
Sbjct: 40  SQLPPTFKVDRAVSTSIYFLLPSGSVSRLHRIPMAETWHFYLGEPLTVIRSLSTRSLQTS 99

Query: 416 RRYKYLEKMF 445
              ++L++MF
Sbjct: 100 GLVRFLQRMF 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,854
Number of Sequences: 28952
Number of extensions: 340262
Number of successful extensions: 1102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)