Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060458.seq
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 206 3e-54
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 103 2e-23
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 42 8e-05
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 39 6e-04
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 39 6e-04
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 39 8e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 39 8e-04
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 38 0.002
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 37 0.002
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 37 0.003
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 37 0.003
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 36 0.005
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 36 0.005
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 36 0.005
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 36 0.007
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 35 0.009
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 35 0.013
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 34 0.022
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 34 0.022
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 33 0.050
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 32 0.088
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 32 0.088
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 31 0.15
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.20
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.27
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.27
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 30 0.36
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 30 0.36
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 29 0.47
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 29 0.47
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.62
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 0.82
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.82
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 29 0.82
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.1
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 28 1.4
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.4
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 1.9
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 1.9
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.5
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 27 2.5
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 3.3
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 26 4.4
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 4.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.8
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 5.8
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 5.8
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 5.8
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 7.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.7
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 206 bits (502), Expect = 3e-54
Identities = 98/131 (74%), Positives = 114/131 (87%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
LI+SKK G+ +L AG GTGKTA+ALAIAQELG KVPFCPMVGSEVYS+EIKKTE LME
Sbjct: 56 LIKSKKFGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALME 115
Query: 434 NFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKLDP 613
NFRRAIGLR++ETKEVYEGEVTE+ + + GGYGKT+SHV++GLKT KGTKQLKLDP
Sbjct: 116 NFRRAIGLRVKETKEVYEGEVTEMVPEEAENPLGGYGKTISHVLLGLKTHKGTKQLKLDP 175
Query: 614 TIYESLPKEKV 646
+IYESL +E+V
Sbjct: 176 SIYESLQREQV 186
Score = 65.3 bits (152), Expect = 8e-12
Identities = 30/64 (46%), Positives = 42/64 (65%)
Frame = +3
Query: 93 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVD**EVRK 272
++I EVK + RI+ HSHIKGLGL E+G + G +GQE AREA GI+ D + +K
Sbjct: 2 VQISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKK 61
Query: 273 WPGE 284
+ G+
Sbjct: 62 FGGK 65
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 103 bits (247), Expect = 2e-23
Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Frame = +2
Query: 251 RLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
++I+ ++AGRA+L+AGPP TGKTAIA+ +AQ LG+ PF + SEVYS E+ KTE L+
Sbjct: 56 KMIQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALL 115
Query: 431 ENFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGK-TVSHVIIGLKTAKGTKQLKL 607
+ R++IG+RI+E E+ EGEV E+ + + GK T+ + GTK +
Sbjct: 116 QALRKSIGVRIKEETEIIEGEVVEVQIDRSITGGNKQGKLTIRSTDMETVYDLGTKMI-- 173
Query: 608 DPTIYESLPKEKV 646
+SL KEKV
Sbjct: 174 -----DSLTKEKV 181
Score = 55.2 bits (127), Expect = 8e-09
Identities = 23/54 (42%), Positives = 37/54 (68%)
Frame = +3
Query: 90 NMKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVV 251
++ + +K +RI AHSHIKG+GL++N P + + G+VGQ AR AAG+++
Sbjct: 2 SISVTSHNDVSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVIL 55
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 41.9 bits (94), Expect = 8e-05
Identities = 24/51 (47%), Positives = 28/51 (54%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
RD R R +LL GPPGTGKT +A A+A E VPF M GS+
Sbjct: 287 RDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGE--ANVPFFFMSGSQ 335
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R +L+GPPGTGKT +A A A E VPF + GSE
Sbjct: 330 RGAILSGPPGTGKTLLAKATAGE--ANVPFLSVSGSE 364
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 448
+LL GPPGTGKT +A A+A EL + F + G E+ + + ++E + N F +A
Sbjct: 691 VLLYGPPGTGKTLLAKAVATEL--SLEFVSIKGPELLNMYVGESEANVRNVFEKA 743
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 38.7 bits (86), Expect = 8e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENF 439
+ +LL GPPGTGKT +A A+A LG V F +V S + I + ++ E F
Sbjct: 167 KGVLLYGPPGTGKTLLARAVAASLG--VNFLKVVSSAIVDKYIGESARIIREMF 218
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 400
R +LL GPPG GKT +A A+A ELG VPF + + S
Sbjct: 209 RGVLLHGPPGCGKTMLANALANELG--VPFISISAPSIVS 246
Score = 35.1 bits (77), Expect = 0.009
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 275 AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 448
A +LL GPPG GKT +A A+A E +K F + G E+ + + ++E + + F RA
Sbjct: 525 APTGVLLWGPPGCGKTLLAKAVANE--SKANFISIRGPELLNKYVGESERAVRQVFLRA 581
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
R +L+ GPPGTGKT +A A+A E G F + G E+ S ++E N R+A
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETGAF--FFLINGPEIMSKMAGESE---SNLRKA 309
Score = 35.1 bits (77), Expect = 0.009
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 251 RLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 421
+ +R + +L GPPGTGKT +A AIA E F + G E+ S ++E
Sbjct: 522 KFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECSAN--FISVKGPELLSMWFGESE 576
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/78 (33%), Positives = 42/78 (53%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLR 460
+ +LL GPPGTGKT IA I + L + P + G E+ + + ++E EN R+
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLNAREPKI-VNGPEILNKYVGQSE---ENVRKLFADA 360
Query: 461 IRETKEVYEGEVTELTLL 514
RE ++ GE + L ++
Sbjct: 361 EREYRD--RGEESGLHII 376
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 284 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
++LL+GP +GKTA+A IA LG++ PF +V +E
Sbjct: 587 SVLLSGPIASGKTALAATIA--LGSEFPFVKLVSAE 620
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R +LL GPPGTGKT + A+A T F +VGSE
Sbjct: 169 RGVLLYGPPGTGKTMLVKAVAN--STAANFIRVVGSE 203
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
L + + R +LL GPPGTGKT +A A+A E ++ F + S + S + ++E L+
Sbjct: 484 LFQGLREPARGMLLFGPPGTGKTMLARAVATE--SRSVFFSISASSLTSKFLGESEKLV 540
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ ++L GPPGTGKT A A+A T F ++GSE+
Sbjct: 214 KGIMLYGPPGTGKTLCARAVANR--TDATFIRVIGSEL 249
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 272 MAGRALLLAGPPGTGKTAIALAIAQELGTKV 364
M R +LL GPPGTGKT + A+A E +V
Sbjct: 311 MPPRGVLLYGPPGTGKTMVMRAVAAEANAQV 341
Score = 33.5 bits (73), Expect = 0.029
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 448
+ +LL GPPG KT A AIA E G + F + G E++ + ++E + + F++A
Sbjct: 583 KGVLLYGPPGCSKTITAKAIATETG--LNFIAVKGPELFDKFVGESERAVRQVFQKA 637
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
+ +LL GPPGTGKT +A A+A E K F + S + S + +E L+
Sbjct: 413 QGMLLFGPPGTGKTMLARAVATE--AKATFFSISASSLTSKYLGDSEKLV 460
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 180 KGILLYGPPGTGKTLLARAVAHH--TDCKFIRVSGSEL 215
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ ++L G PGTGKT +A A+A + T F +VGSE+
Sbjct: 226 KGVILYGAPGTGKTLLAKAVANQ--TSATFLRVVGSEL 261
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
+LL GPPGTGK+ +A A+A E G+ F + S++ S + ++E L+
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGS--TFFSISSSDLVSKWMGESERLV 210
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 272 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 412
M G+ + L GPPG GKT++ +IA L + F VG EIK
Sbjct: 569 MQGKIMCLVGPPGVGKTSVGKSIASALNREF-FRFSVGGLTDVAEIK 614
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 33.9 bits (74), Expect = 0.022
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGT---KVPFCPMVGSEVYSTEIKKTE----VLMENF 439
R +L GPPGTGKT +A +A T K+ F GS+ S + + E +L E
Sbjct: 407 RGVLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEA 466
Query: 440 RR 445
RR
Sbjct: 467 RR 468
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 32.7 bits (71), Expect = 0.050
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGT---KVPFCPMVGSEVYSTEIKKTE 421
R +L GPPGTGKT +A A+A + KV F G++ S + + E
Sbjct: 301 RGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAE 350
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 31.9 bits (69), Expect = 0.088
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPG+GKT+ A+A EL
Sbjct: 243 RGYLLYGPPGSGKTSFLYALAGEL 266
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.9 bits (69), Expect = 0.088
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
+ LLL GPPG GKT +A A+A++
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAKQ 148
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 272 MAGRALLLAGPPGTGKTAIALAIAQELG-TKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
+ R LL+ GP G GK+ +A+ELG + + + + + S + T L E F R
Sbjct: 103 LESRLLLICGPSGCGKSTAVQVLAKELGYSLIEWLNPMNLKEPSNQESDTLSLTEKFSRF 162
Query: 449 IGL 457
+ L
Sbjct: 163 MSL 165
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
+ +LL G PG GKT++ A+A+E G
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETG 1584
Score = 29.5 bits (63), Expect = 0.47
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R +LLAGP G GK + IA +LG ++
Sbjct: 153 RPILLAGPEGIGKKFLITQIAAKLGQQI 180
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKV 364
LLL G GTGKT +A LG KV
Sbjct: 470 LLLVGETGTGKTTTIQLLAGLLGQKV 495
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
+A+LL+GPPG GKT A +A+ G V
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEGYDV 437
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQEL 352
+L GPPGTGKT+ LA A+++
Sbjct: 59 MLFYGPPGTGKTSTILACARKI 80
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 272 MAGRALLLAGPPGTGKTAIALAIAQELG 355
MAG L+L GPPG GK A I ++ G
Sbjct: 1 MAGMRLILVGPPGAGKGTQAPNIQKKYG 28
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 242 DSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGT 358
++ R + SK ++ L+ GPPGTGKT + ++ L T
Sbjct: 399 EAVRAVLSKPLS----LIQGPPGTGKTVTSASVVYHLAT 433
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQEL 352
+L G PGTGKT+ LA+++EL
Sbjct: 55 MLFYGSPGTGKTSTILALSREL 76
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
+ L+ GPPGTGKT +A A A +
Sbjct: 220 KGCLMFGPPGTGKTLLARACAAQ 242
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.1 bits (62), Expect = 0.62
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = -3
Query: 469 FTYTQAYSTSKILH*YLCFLDLCAVNFTTNHWTERNLSSKFLSDGKSYSSFASTRRPCQE 290
FT++ +ST +H + + +FTT+H L+S F + +SS + +
Sbjct: 3710 FTHS-TFSTGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGLSTK 3768
Query: 289 *SSPGHFLTSYQSTTIPAASRADS 218
SS G +S S T+ ++S D+
Sbjct: 3769 SSSLGKIGSSSISLTLSSSSIRDA 3792
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 0.82
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQEL 352
L+ GPPGTGKT + I Q+L
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL 249
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.82
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQE-LGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIR 466
+L G PG GKT+IA +A+ + VP + ++ S ++ V FR RI+
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVP-ANLSNCKLLSLDVGSL-VAGSKFRGEFEERIK 263
Query: 467 ET-KEVYEGEVTELTLLKQKILAGGYG 544
KEV E E + + + L G G
Sbjct: 264 SVLKEVEESETPIILFVDEMHLLMGAG 290
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 284 ALLLAGPPGTGKTAIALAIA 343
+ L GP GTGKT + A+A
Sbjct: 616 SFLFCGPSGTGKTLLTKALA 635
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.7 bits (61), Expect = 0.82
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 421
+LL G PG GKT +A AI+ V F + G E+ I K+E
Sbjct: 643 ILLFGYPGCGKTYLASAISSTF--PVQFISIKGPELLDKYIGKSE 685
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQELG 355
++ GP G+GKT +A A++++LG
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG 39
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 293 LAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTE 406
+ GP G+GKTA+ L + + LG K +V +++++ E
Sbjct: 91 VGGPVGSGKTALLLQLCRLLGEKYSI-GVVTNDIFTRE 127
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 135 ISAHS-HIKGLGLDENGVPIQMAAGLVG 215
+S H+ IK LD+ G+PI++ +GL+G
Sbjct: 35 VSLHNLRIKPEALDKLGIPIEITSGLIG 62
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 275 AGRALLLAGPPGTGKTAI 328
AG AL ++G PGTGKT +
Sbjct: 191 AGGALYVSGAPGTGKTVL 208
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 242 DSCRLIRSKKMAGRAL-LLAGPPGTGKTAIALAIAQEL 352
DS +L + M + L ++ GPPGTGK+ + L + L
Sbjct: 373 DSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETL 410
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQEL 352
L+ GPPGTGKT + I L
Sbjct: 1149 LIQGPPGTGKTKTIIGIISAL 1169
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 254 LIRSKKMAGRALLL--AGPPGTGKTAIALAIAQELGTK 361
L + K GR +L +GP G+GK+ +A A+ EL K
Sbjct: 15 LEKQPKPEGRPFILGISGPQGSGKSTLASALDTELTRK 52
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQ 346
+++ G PGTGKT +A +A+
Sbjct: 11 IIICGTPGTGKTTLAEQVAE 30
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R + +AGP G+GKT++A I + L
Sbjct: 22 RFIGIAGPSGSGKTSVAQLIVKAL 45
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 284 ALLLAGPPGTGKTAIALAIAQEL 352
+ L GP G GKTA+ A+A+ L
Sbjct: 534 SFLFLGPTGVGKTALTKALAEFL 556
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAI 340
L+ GPPGTGKT L +
Sbjct: 1290 LIQGPPGTGKTKTILGM 1306
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTA 325
G L ++G PGTGKTA
Sbjct: 361 GACLYISGTPGTGKTA 376
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 534 PARIFCFNSVNSVTSPSYT--SLVSRIR 457
P R++C ++ T+PS T L++RIR
Sbjct: 585 PERLYCAKPISMATAPSETDSKLINRIR 612
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQELG 355
L+ GP GTGK+ I AI LG
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLG 58
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 572 LKTAKGTKQLKLDPTIYESLPKEK 643
+KT G KQL P+I++ + E+
Sbjct: 1 MKTVSGVKQLSFTPSIFKKITPEQ 24
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 299 GPPGTGKTAIALAIAQELGTKV 364
GP GTGKT A++ LG V
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKNV 1911
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,044
Number of Sequences: 5004
Number of extensions: 61501
Number of successful extensions: 242
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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