Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060458.seq
         (681 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    25   1.7  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.2  
AY081778-1|AAL91655.1|  507|Anopheles gambiae cytochrome P450 pr...    24   5.1  

>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 105 EVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESARE 233
           E+K ++  Q+ S      G G    G P   AAG VG  S  +
Sbjct: 308 EIKHSSLYQQTSRQHGTGGQGSSVGGAPTGAAAGSVGTASGEQ 350


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 290 LLAGPPGTGKTAIALAIAQELG 355
           ++ GP GTGK+AI   I   +G
Sbjct: 34  IILGPNGTGKSAIVAGIVLGMG 55


>AY081778-1|AAL91655.1|  507|Anopheles gambiae cytochrome P450
           protein.
          Length = 507

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 93  MKIEEVKSTAKTQRISAHSHIKGLG-LDENGVPIQMAAGLVGQESARE 233
           ++  E+ +  ++  ++    IK  G LD   VPI+ AAGL   E A +
Sbjct: 257 VEYREMNNVQRSDFMNLLLQIKNTGSLDGGDVPIKGAAGLTMNELAAQ 304


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,946
Number of Sequences: 2352
Number of extensions: 16209
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)