Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060458.seq
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 186 1e-47
AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb (recombi... 105 3e-23
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 41 0.001
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 41 0.001
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 40 0.002
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 40 0.002
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 39 0.003
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 39 0.004
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 39 0.004
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 38 0.005
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 38 0.005
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 38 0.007
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 38 0.009
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 36 0.020
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 36 0.020
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 36 0.020
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 36 0.027
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 36 0.027
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 36 0.027
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 36 0.035
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 35 0.047
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 35 0.047
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 35 0.047
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 35 0.047
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 35 0.062
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 34 0.082
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 34 0.082
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 34 0.082
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 34 0.082
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 34 0.082
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 34 0.11
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 34 0.11
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 34 0.11
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 34 0.11
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 34 0.11
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 34 0.11
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 34 0.11
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 33 0.14
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 33 0.19
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical pr... 32 0.44
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 31 0.58
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 31 0.58
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 31 0.58
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 31 1.0
AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical ... 31 1.0
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 30 1.3
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 30 1.3
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 30 1.3
Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 30 1.8
U88169-6|AAB42236.2| 216|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 5.4
U88169-7|ABQ13064.1| 205|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 28 5.4
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ... 28 5.4
Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 27 9.4
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 9.4
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 9.4
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 27 9.4
AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 27 9.4
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 186 bits (453), Expect = 1e-47
Identities = 89/133 (66%), Positives = 114/133 (85%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
+IR K MAGRA+L+AGPP TGKTAIALA++QELG VPF P+V SEV+S E+KKTEVLM
Sbjct: 74 MIRLKCMAGRAVLIAGPPATGKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMR 133
Query: 434 NFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKLDP 613
+FRRAIGLR++ETK+VYEGEVTEL+ ++ G GKT+SH+++ LKTAKG+KQLKLDP
Sbjct: 134 SFRRAIGLRVKETKDVYEGEVTELSPVEASD-NSGMGKTISHLVLSLKTAKGSKQLKLDP 192
Query: 614 TIYESLPKEKVEV 652
+IY+S+ K++VEV
Sbjct: 193 SIYDSILKQRVEV 205
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/54 (61%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 IEEVKSTAKT-QRISAHSHIKGLGLD-ENGVPIQMAAGLVGQESAREAAGIVVD 254
IEEVK T K +RI+AHSH+KGLG+D E AAG VGQ AR AA IVVD
Sbjct: 20 IEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVVD 73
>AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb
(recombination protein) homologprotein 2 protein.
Length = 448
Score = 105 bits (252), Expect = 3e-23
Identities = 59/132 (44%), Positives = 82/132 (62%)
Frame = +2
Query: 251 RLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
++I+ K+AGRALL+ G PG GKTAIA+AI++ELG PF +V SE+YS EI KTE L
Sbjct: 57 KMIQEGKIAGRALLVTGEPGAGKTAIAIAISKELGEDTPFVSIVASEIYSNEINKTEALT 116
Query: 431 ENFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKLD 610
+ FRRA+G++I+E EV EGEV L + + A G G V + ++T L
Sbjct: 117 QAFRRALGIQIKEETEVLEGEVISLEVDRS---ANGMGPKVGK--LTMRTTDMETIYDLG 171
Query: 611 PTIYESLPKEKV 646
+ ++ KEKV
Sbjct: 172 SKMVDACLKEKV 183
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +3
Query: 108 VKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVV 251
VK K +R S HSHI GLGL++ ++ G+VGQ +AR+AAG++V
Sbjct: 9 VKDIVKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIV 56
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ +LL GPPGTGKT +A AIA E +VPF GSE
Sbjct: 235 KGVLLVGPPGTGKTLLARAIAGE--AQVPFFHTAGSE 269
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +2
Query: 251 RLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
+L + + +LL GPPGTGK+ IA A+A E G F + S++ S + ++E L+
Sbjct: 142 QLFTGNRKPWQGILLFGPPGTGKSYIAKAVATEAGEST-FFSISSSDLMSKWLGESEKLV 200
Query: 431 EN 436
+N
Sbjct: 201 KN 202
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
R +LL GPPGTGKT IA A+A E G+ F + G EV S ++E N R+A
Sbjct: 245 RGILLFGPPGTGKTLIARAVANETGSF--FFLINGPEVMSKMSGESE---SNLRKA 295
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
R +L GPPG GKT +A AIA E
Sbjct: 518 RGVLFYGPPGCGKTLLAKAIANE 540
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R LL GPPG GKT +A A+A E + VPF M GSE
Sbjct: 319 RGALLTGPPGCGKTLLAKALAAE--STVPFISMNGSE 353
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R LL GPPG GKT +A A+A E + VPF M GSE
Sbjct: 319 RGALLTGPPGCGKTLLAKALAAE--STVPFISMNGSE 353
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
R +LL GPPGTGKT IA A+A E G F + G E+ S ++E N R+A
Sbjct: 244 RGILLFGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKMSGESE---SNLRKA 294
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
R +L GPPG GKT +A AIA E
Sbjct: 517 RGVLFYGPPGCGKTLLAKAIANE 539
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
R +LL GPPGTGKT IA A+A E G F + G E+ S ++E N R+A
Sbjct: 244 RGILLFGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKMSGESE---SNLRKA 294
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
R +L GPPG GKT +A AIA E
Sbjct: 517 RGVLFYGPPGCGKTLLAKAIANE 539
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
+A++LAGPPGTGKT IA AIA E
Sbjct: 227 KAMVLAGPPGTGKTLIARAIASE 249
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
+A++LAGPPGTGKT IA AIA E
Sbjct: 227 KAMVLAGPPGTGKTLIARAIASE 249
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
+A++LAGPPGTGKT IA AIA E
Sbjct: 227 KAMVLAGPPGTGKTLIARAIASE 249
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRAIGL 457
+ +LL GPPG GKT +A A+A E G + F + G E+ + + ++E + F+RA
Sbjct: 569 QGILLCGPPGCGKTLLAKAVANETG--MNFISVKGPELLNMYVGESERAVRTVFQRA--- 623
Query: 458 RIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKL 607
R + ++ E+ L + + G + V+ ++ + +G +++ L
Sbjct: 624 RDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFL 673
Score = 34.7 bits (76), Expect = 0.062
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 421
R ++ GPPG GKT A A+A EL +P + +E+ S +TE
Sbjct: 240 RGFIVHGPPGCGKTMFAQAVAGELA--IPMLQLAATELVSGVSGETE 284
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 248 CRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTK 361
C++ S K G L GPPG GKT+IA AIA+ +G K
Sbjct: 321 CKMNNSVK--GMILCFTGPPGIGKTSIAKAIAESMGRK 356
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 37.9 bits (84), Expect = 0.007
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRAIGL 457
+ +LL GPPG GKT +A A+A E G + F + G E+ + + ++E + F+RA
Sbjct: 569 QGILLCGPPGCGKTLLAKAVANETG--MNFFSVKGPELLNMYVGESERAVRTVFQRA--- 623
Query: 458 RIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKL 607
R + ++ E+ L + + G + V+ ++ + +G +++ L
Sbjct: 624 RDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFL 673
Score = 34.7 bits (76), Expect = 0.062
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 421
R ++ GPPG GKT A A+A EL +P + +E+ S +TE
Sbjct: 240 RGFIVHGPPGCGKTMFAQAVAGELA--IPMLQLAATELVSGVSGETE 284
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ +L GPPGTGKT +A A A E VPF + GSE
Sbjct: 327 KGAILTGPPGTGKTLLAKATAGE--ANVPFITVSGSE 361
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
L S+ + ++L G PG GKT IA A+A E K+ F + G E+ + + ++E E
Sbjct: 485 LFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPELLNKYVGQSE---E 539
Query: 434 NFRR 445
N R+
Sbjct: 540 NLRK 543
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
L S+ + ++L G PG GKT IA A+A E K+ F + G E+ + + ++E E
Sbjct: 485 LFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPELLNKYVGQSE---E 539
Query: 434 NFRR 445
N R+
Sbjct: 540 NLRK 543
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
L S+ + ++L G PG GKT IA A+A E K+ F + G E+ + + ++E E
Sbjct: 485 LFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPELLNKYVGQSE---E 539
Query: 434 NFRR 445
N R+
Sbjct: 540 NLRK 543
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT +A A+A T+ F + GSE+
Sbjct: 194 KGVLLFGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 229
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R +LL GPPGTGKT++ +AQ L ++
Sbjct: 173 RLILLTGPPGTGKTSLCKGLAQHLSIRM 200
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT +A A+A T+ F + GSE+
Sbjct: 189 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 224
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT +A A+A T+ F + GSE+
Sbjct: 210 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 245
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT A A+A T F ++GSE+
Sbjct: 212 KGVLLYGPPGTGKTLCARAVANR--TDACFIRVIGSEL 247
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R +L+ GPPG GKT +A A+A T F +VGSE
Sbjct: 196 RGVLMYGPPGCGKTMLAKAVA--ANTAASFIRVVGSE 230
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +2
Query: 266 KKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 412
K + G+ L GPPG GKT+IA +IA L + F VG EIK
Sbjct: 501 KSIGGKILCFHGPPGVGKTSIAKSIATALNREY-FRFSVGGMTDVAEIK 548
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 448
+ LL GPPGTGKT +A A+A +L F +V S + I + ++ E F A
Sbjct: 177 KGCLLFGPPGTGKTLLARAVASQLDCN--FLKVVSSAIVDKYIGESARMIREMFNYA 231
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 448
+ LL GPPGTGKT +A A+A +L F +V S + I + ++ E F A
Sbjct: 185 KGCLLFGPPGTGKTLLARAVASQLDCN--FLKVVSSAIVDKYIGESARMIREMFNYA 239
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 34.7 bits (76), Expect = 0.062
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +L+ GPPGTGKT +A A+A + TK F + G ++
Sbjct: 212 KGVLMYGPPGTGKTMMARAVAAQ--TKSTFLKLAGPQL 247
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVP 367
R +LL GPPGTGKT +A I + L + P
Sbjct: 331 RGILLFGPPGTGKTLMARQIGKMLNAREP 359
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVP 367
R +LL GPPGTGKT +A I + L + P
Sbjct: 331 RGILLFGPPGTGKTLMARQIGKMLNAREP 359
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVP 367
R +LL GPPGTGKT +A I + L + P
Sbjct: 265 RGILLFGPPGTGKTLMARQIGKMLNAREP 293
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 34.3 bits (75), Expect = 0.082
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVL---MENFRRAIGL 457
LL GPPGTGKT LA A+++ + MV E+ +++ + +V+ + NF + GL
Sbjct: 65 LLFYGPPGTGKTTTVLAAARQMYSPTKMASMV-LELNASDERGIDVVRNTIVNFAQTKGL 123
Query: 458 RIRET 472
+ T
Sbjct: 124 QAFST 128
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 34.3 bits (75), Expect = 0.082
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ ++L G PGTGKT +A A+A + T F +VGSE+
Sbjct: 223 KGVILYGCPGTGKTLLAKAVANQ--TSATFLRIVGSEL 258
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTK 361
R +LL GPPG GKT +A A+A+ G +
Sbjct: 115 RGILLYGPPGCGKTLLAKAVARAAGCR 141
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTK 361
R +LL GPPG GKT +A A+A+ G +
Sbjct: 118 RGILLYGPPGCGKTLLAKAVARAAGCR 144
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 421
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 421
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 424 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 473
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 421
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 421
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 421
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 424 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 473
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 421
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE 421
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESE 475
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 33.9 bits (74), Expect = 0.11
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Frame = +2
Query: 242 DSCRLIRSKKMAGRAL-LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKT 418
+S ++ K++ R L L+ GPPGTGKT ++ I L K +V S
Sbjct: 447 NSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHLA 506
Query: 419 EVLMENFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQ 598
E + + + + L R ++E E V LTL Q + GG +I LK G +
Sbjct: 507 EKIHKTGLKVVRLCAR-SREHSETTVPYLTLQHQLKVMGG---AELQKLIQLKDEAGELE 562
Query: 599 LKLDPTIYESLPKEK 643
K D Y L + K
Sbjct: 563 FK-DDLRYMQLKRVK 576
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 33.9 bits (74), Expect = 0.11
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Frame = +2
Query: 242 DSCRLIRSKKMAGRAL-LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKT 418
+S ++ K++ R L L+ GPPGTGKT ++ I L K +V S
Sbjct: 447 NSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHLA 506
Query: 419 EVLMENFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQ 598
E + + + + L R ++E E V LTL Q + GG +I LK G +
Sbjct: 507 EKIHKTGLKVVRLCAR-SREHSETTVPYLTLQHQLKVMGG---AELQKLIQLKDEAGELE 562
Query: 599 LKLDPTIYESLPKEK 643
K D Y L + K
Sbjct: 563 FK-DDLRYMQLKRVK 576
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTK 361
LL GPPGTGKT+ ALA ++L K
Sbjct: 51 LLFYGPPGTGKTSAALAFCRQLFPK 75
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 LIRSKKM-AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
+++SK+ ++ ++G PGTGKTA + + + LG V C + ST K L
Sbjct: 186 IMKSKETNTSLSIYVSGQPGTGKTATTMRVLKSLGKSVRSCIV---NCASTNTK--SALF 240
Query: 431 ENFRRAIGLRIRETKEVYEGEVTE 502
+ ++ L + +E++E V +
Sbjct: 241 KTIFESLDLDGKPNEEIFEKHVKQ 264
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 349
L + + + +LL GPPG GKT +A A+A E
Sbjct: 203 LFKGLRQPVKGILLFGPPGNGKTLLAKAVAGE 234
>Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical
protein F54B3.3 protein.
Length = 595
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
R ++ GPPGTGKT A ++AQ G + + + G ++
Sbjct: 343 RNVMFYGPPGTGKTLFAKSLAQHSG--LDYAVLTGGDI 378
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 275 AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
A + ++L G PGTGKT +A A+A T F GS++
Sbjct: 216 APKGVILYGEPGTGKTLLAKAVAN--STSATFIRATGSDL 253
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQE-LGTKV 364
++L+GPPG GKT A+A+E LG KV
Sbjct: 46 IVLSGPPGCGKTTSVWALARELLGDKV 72
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
+ +LL GPPGTGKT I +A + K F + S + S + + E L+
Sbjct: 350 KGVLLFGPPGTGKTMIGRCVASQ--CKATFFNISASSLTSKWVGEGEKLV 397
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
+A LL+G PG GKT A Q+LG ++
Sbjct: 341 KAALLSGSPGVGKTTCAYMACQQLGLQL 368
>AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical
protein Y39A1A.12 protein.
Length = 636
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKT 418
+I K+ A+ ++G PGTGKTA A+ + V EV + KKT
Sbjct: 284 VIDPKRGESSAMYISGVPGTGKTATVRAVVNSMKKSKKCQKFVYVEVNAMIFKKT 338
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R L GPPGTGK++ A+A G V
Sbjct: 198 RGYLFYGPPGTGKSSFISALASHFGYSV 225
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R L GPPGTGK++ A+A G V
Sbjct: 244 RGYLFYGPPGTGKSSFISALASHFGYSV 271
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Frame = +2
Query: 236 CRDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVG----SEVYST 403
C ++ I + + +LL G PG GK++ +A+AQ G + + S+++ +
Sbjct: 1335 CAENFYRIARGLLISKPILLEGAPGCGKSSTVMALAQLTGNPITRLNLSDQTDLSDLFGS 1394
Query: 404 EIK-KTEVLMENFRRAIGLRIRETKEVYEGEVTELTLLKQKILAG 535
++ TE FR G ++ K+ + E+ L Q +L G
Sbjct: 1395 DVPVLTEDGTMTFRWEDGPVLKAIKKGEWILLDEMNLASQSVLEG 1439
>Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical
protein T21B4.14 protein.
Length = 426
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 272 FSYFLSIYNYPCSLTCRLLTHETGCHLNRNTI 177
++Y+L+ YN CSL R L ++G L N I
Sbjct: 85 YNYYLTFYNTNCSLDDRFLVSKSGLALTCNII 116
>Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical
protein D2030.2b protein.
Length = 470
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Frame = +2
Query: 260 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 439
+S ++ +LL GP G GKT + +A+ L + C + E +++
Sbjct: 135 QSVRLEKSNVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKL 194
Query: 440 RRAIGLRIRETKE--VYEGEVTELTLLKQKILAG---GYGKTVSHVIIGLKTAKGT 592
+A G + + ++ V+ EV ++ + A G+ V H + LK +GT
Sbjct: 195 VQAAGGNVEKAQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHAL--LKLVEGT 248
>Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical
protein D2030.2a protein.
Length = 586
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Frame = +2
Query: 260 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 439
+S ++ +LL GP G GKT + +A+ L + C + E +++
Sbjct: 251 QSVRLEKSNVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKL 310
Query: 440 RRAIGLRIRETKE--VYEGEVTELTLLKQKILAG---GYGKTVSHVIIGLKTAKGT 592
+A G + + ++ V+ EV ++ + A G+ V H + LK +GT
Sbjct: 311 VQAAGGNVEKAQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHAL--LKLVEGT 364
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 266 KKMAGRALLLAGPPGTGKTAIALAIAQELG 355
++ + + LLL+GP G GK+ +A +A++ G
Sbjct: 326 RRPSSKMLLLSGPAGLGKSTLARIVARQAG 355
>U88169-6|AAB42236.2| 216|Caenorhabditis elegans Hypothetical
protein T03F1.8a protein.
Length = 216
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFC-------PMVGSE-- 391
R SC+ +KM R ++L+GP G GK+ I QE F P G E
Sbjct: 12 RPSCQSF-IRKMPCRPIVLSGPSGGGKSTILTRAMQEYPNSFAFSVSHTTRQPRAGEEHG 70
Query: 392 --VYSTEIKKTEVLMEN 436
Y TE +K + +++N
Sbjct: 71 KHYYFTEKEKMQEMIKN 87
>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
protein D2005.4 protein.
Length = 1188
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 476 EVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESLPK 637
E+ E EV E+ L+Q +L G+G+ +S + + K K LKL IY+ L K
Sbjct: 358 EISEAEVDEM--LEQSLLDEGFGEFLSTALHAPELFKTPKHLKL---IYDQLEK 406
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 266 KKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRR 445
K AGR L L GP G+GK+ I + + F V EV E +V + + R
Sbjct: 1060 KLPAGRTLALVGPSGSGKSTIISLLER-------FYHAVDGEVKIDEENVVDVNLHHLRE 1112
Query: 446 AIGLRIRE 469
++ L +E
Sbjct: 1113 SVSLVSQE 1120
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELG 355
+L+ G PGTGK+ + +A++LG
Sbjct: 12 ILVTGSPGTGKSTLGQQVAEKLG 34
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQEL 352
L+ GPPGTGKT I + I + +
Sbjct: 827 LIQGPPGTGKTHIGVQIVKTI 847
>U88169-7|ABQ13064.1| 205|Caenorhabditis elegans Hypothetical
protein T03F1.8b protein.
Length = 205
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Frame = +2
Query: 266 KKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFC-------PMVGSE----VYSTEIK 412
+KM R ++L+GP G GK+ I QE F P G E Y TE +
Sbjct: 9 RKMPCRPIVLSGPSGGGKSTILTRAMQEYPNSFAFSVSHTTRQPRAGEEHGKHYYFTEKE 68
Query: 413 KTEVLMEN 436
K + +++N
Sbjct: 69 KMQEMIKN 76
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQEL 352
++ GPPGTGKT +A+ I +
Sbjct: 824 MVVGPPGTGKTDVAVQIISNI 844
>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
protein Y46G5A.4 protein.
Length = 2145
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIA-LAIAQELG 355
R RL S + LLL P G GKT +A L + QE+G
Sbjct: 477 RIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIG 516
>Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical
protein Y53C12B.5b protein.
Length = 276
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 453 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 352
P+ ++ S+ FL+S++ P+IGQ+ L+P
Sbjct: 96 PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 129
>Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical
protein Y53C12B.5a protein.
Length = 290
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 453 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 352
P+ ++ S+ FL+S++ P+IGQ+ L+P
Sbjct: 229 PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 262
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALA 337
+ L+L GPPG+GKT LA
Sbjct: 2531 KPLVLCGPPGSGKTMTLLA 2549
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALA 337
+ L+L GPPG+GKT LA
Sbjct: 2531 KPLVLCGPPGSGKTMTLLA 2549
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKV 364
L+L GP G GKTA+ A+A++ ++
Sbjct: 819 LVLIGPSGVGKTALFRALAKQENMRI 844
>AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative
transcription factor MAB-3 protein.
Length = 290
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 453 PIARRKFSINTSVFLISVL*TSLPTIGQKGTLVP 352
P+ ++ S+ FL+S++ P+IGQ+ L+P
Sbjct: 229 PMNQQLISLQQQQFLMSIIQNMAPSIGQQAPLLP 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,695
Number of Sequences: 27780
Number of extensions: 342018
Number of successful extensions: 1055
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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