Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060458.seq
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 220 6e-58
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 109 1e-24
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 108 3e-24
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 44 7e-05
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 44 1e-04
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 43 2e-04
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 43 2e-04
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 42 3e-04
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 41 7e-04
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 41 7e-04
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 40 0.002
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 39 0.003
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 39 0.003
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 39 0.003
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 39 0.004
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 39 0.004
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 39 0.004
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 39 0.004
At1g73170.1 68414.m08466 expressed protein 39 0.004
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 39 0.004
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 39 0.004
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 38 0.005
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 38 0.006
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 38 0.006
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 38 0.006
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 38 0.006
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 38 0.006
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 38 0.006
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 38 0.008
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 38 0.008
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 37 0.011
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 37 0.011
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 37 0.011
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 37 0.011
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 37 0.011
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 37 0.014
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 37 0.014
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 36 0.019
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 36 0.019
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 36 0.019
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 36 0.025
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 36 0.025
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 36 0.025
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 36 0.025
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 36 0.033
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 36 0.033
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 35 0.043
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 35 0.043
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 35 0.043
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 35 0.043
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 35 0.043
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 35 0.043
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 35 0.043
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 35 0.043
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 35 0.043
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 35 0.043
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 35 0.043
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 35 0.057
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 35 0.057
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 35 0.057
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 35 0.057
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 35 0.057
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 34 0.076
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 34 0.076
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 34 0.076
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 34 0.076
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 34 0.076
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 34 0.10
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 33 0.13
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 33 0.13
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 33 0.13
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 33 0.17
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 33 0.23
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.23
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 33 0.23
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 33 0.23
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 33 0.23
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 33 0.23
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 32 0.31
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 32 0.40
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 32 0.40
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 31 0.53
At3g25620.1 68416.m03189 ABC transporter family protein similar ... 31 0.53
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 31 0.53
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 31 0.71
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 31 0.71
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 31 0.71
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 31 0.71
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 31 0.71
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 31 0.93
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 31 0.93
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 31 0.93
At4g19060.1 68417.m02808 disease resistance protein-related cont... 31 0.93
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 31 0.93
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 31 0.93
At5g66005.2 68418.m08311 Expressed protein 30 1.2
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 30 1.2
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 30 1.2
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.2
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 30 1.2
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 30 1.2
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 30 1.6
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 30 1.6
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 30 1.6
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 29 2.2
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 29 2.2
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 29 2.2
At4g14700.1 68417.m02259 replication control protein, putative s... 29 2.2
At4g12620.1 68417.m01988 replication control protein, putative s... 29 2.2
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 29 2.2
At1g77620.1 68414.m09037 expressed protein 29 2.2
At5g62960.1 68418.m07899 expressed protein 29 2.8
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 29 2.8
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 2.8
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 29 2.8
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.8
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 29 2.8
At3g25920.1 68416.m03231 50S ribosomal protein L15, chloroplast ... 29 2.8
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 29 2.8
At3g10420.1 68416.m01249 sporulation protein-related similar to ... 29 2.8
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 29 2.8
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 29 3.8
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 29 3.8
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 29 3.8
At4g12020.1 68417.m01912 protein kinase family protein similar t... 29 3.8
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 29 3.8
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 3.8
At2g34470.1 68415.m04231 urease accessory protein (UREG) identic... 29 3.8
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 29 3.8
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 29 3.8
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 3.8
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 28 5.0
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 28 5.0
At5g45440.1 68418.m05583 disease resistance protein-related cont... 28 5.0
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 28 5.0
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 28 5.0
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 28 5.0
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 28 5.0
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 5.0
At2g37010.1 68415.m04539 ABC transporter family protein contains... 28 5.0
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 28 5.0
At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containi... 28 5.0
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 28 6.6
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 28 6.6
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 28 6.6
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 28 6.6
At2g36380.1 68415.m04464 ABC transporter family protein related ... 28 6.6
At2g07710.1 68415.m00998 hypothetical protein 28 6.6
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 28 6.6
At1g53460.1 68414.m06060 expressed protein 28 6.6
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 6.6
At5g63590.1 68418.m07983 flavonol synthase, putative similar to ... 27 8.7
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 8.7
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff... 27 8.7
At5g09430.1 68418.m01092 hydrolase, alpha/beta fold family prote... 27 8.7
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 27 8.7
At4g39540.2 68417.m05591 shikimate kinase family protein similar... 27 8.7
At4g39540.1 68417.m05590 shikimate kinase family protein similar... 27 8.7
At4g14746.1 68417.m02269 expressed protein 27 8.7
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 27 8.7
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 8.7
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 27 8.7
At2g19490.1 68415.m02278 recA family protein contains Pfam profi... 27 8.7
At1g33290.2 68414.m04118 sporulation protein-related isoform con... 27 8.7
At1g33290.1 68414.m04117 sporulation protein-related isoform con... 27 8.7
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 220 bits (538), Expect = 6e-58
Identities = 104/133 (78%), Positives = 121/133 (90%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
+I+ KKMAG+ALLLAGPPGTGKTA+AL I+QELG+KVPFCPMVGSEVYS+E+KKTEVLME
Sbjct: 58 MIKQKKMAGKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLME 117
Query: 434 NFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKLDP 613
NFRRAIGLRI+ETKEVYEGEVTEL+ + + L GGYGK++SHV+I LKT KGTK LKLDP
Sbjct: 118 NFRRAIGLRIKETKEVYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHLKLDP 177
Query: 614 TIYESLPKEKVEV 652
TIY++L KEKV V
Sbjct: 178 TIYDALIKEKVAV 190
Score = 84.2 bits (199), Expect = 7e-17
Identities = 39/64 (60%), Positives = 52/64 (81%)
Frame = +3
Query: 93 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVD**EVRK 272
+KIEE++STAK QRI+ H+HIKGLGL+ G+PI++AAG VGQ AREAAG+VVD + +K
Sbjct: 4 VKIEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKK 63
Query: 273 WPGE 284
G+
Sbjct: 64 MAGK 67
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 109 bits (263), Expect = 1e-24
Identities = 59/132 (44%), Positives = 82/132 (62%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
LIR K++GRA+L+AG PGTGK AIA+ IA+ LG + PF + GSE++S E+ KTE L +
Sbjct: 58 LIRDGKISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQ 117
Query: 434 NFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKLDP 613
FR+AIG+RI+E +V EGEV +++ + G KT I +KT L
Sbjct: 118 AFRKAIGVRIKEETDVIEGEVVTISIDRPASSGGSVKKTGK---ITMKTTDMESNFDLGW 174
Query: 614 TIYESLPKEKVE 649
+ E L KEKV+
Sbjct: 175 KLIEPLDKEKVQ 186
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/54 (42%), Positives = 37/54 (68%)
Frame = +3
Query: 93 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVD 254
+++ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+ ++
Sbjct: 4 LRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLE 57
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 108 bits (260), Expect = 3e-24
Identities = 58/133 (43%), Positives = 87/133 (65%)
Frame = +2
Query: 251 RLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
++IR K+AGRA+L+AG PGTGKTAIA+ +A+ LG + PF + GSE++S E+ KTE L
Sbjct: 57 QMIREGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALT 116
Query: 431 ENFRRAIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKLD 610
++FR+AIG+RI+E EV EGEV E+ + + +G K+ + +KT +
Sbjct: 117 QSFRKAIGVRIKEETEVIEGEVVEVQ-IDRPASSGVASKSGK---MTMKTTDMETVYDMG 172
Query: 611 PTIYESLPKEKVE 649
+ E+L KEKV+
Sbjct: 173 AKMIEALNKEKVQ 185
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = +3
Query: 93 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVV 251
+K+ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+++
Sbjct: 4 LKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVIL 56
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/51 (50%), Positives = 29/51 (56%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
RD R R + +LL GPPGTGKT +A AIA E G VPF GSE
Sbjct: 247 RDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE 295
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRI 463
+LL GPPG GKT +A AIA E G VPF M GSE + + + F+RA ++
Sbjct: 466 VLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGSARIRDLFKRA---KV 520
Query: 464 RETKEVYEGEVTELTLLKQKI 526
+ ++ E+ L +Q I
Sbjct: 521 NKPSVIFIDEIDALATRRQGI 541
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 257 KGVLLTGPPGTGKTLLAKAIAGEAG--VPFFSLSGSE 291
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 254 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 288
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 261 KGVLLIGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 295
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R +LL GPPGTGKT +A A+A E G VPF + SE
Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAG--VPFFSVSASE 402
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAI---AQELGTKVPFCPMVGSEVYSTEIKKTE 421
R +LL GPPGTGKT IA A+ A + G KV F G++V S + + E
Sbjct: 416 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE 465
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 439
R +LL+GPPGTGKT A +A+E G +PF G+E +E + E F
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAAKINEMF 577
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ +LL G PGTGKT +A AIA E G VPF GSE
Sbjct: 396 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE 430
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ LL GPPGTGKT +A A+A E G VPF SE
Sbjct: 284 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 318
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ LL GPPGTGKT +A A+A E G VPF SE
Sbjct: 296 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 330
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R +LL GPPGTGKT +A A+A T F +VGSE
Sbjct: 190 RGVLLYGPPGTGKTMLAKAVANH--TTAAFIRVVGSE 224
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL----GTKVPFCPMVGSEVYS 400
R +LL GPPGTGKT++ A+AQ+L ++ P C ++ +S
Sbjct: 203 RIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHS 246
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ LL GPPGTGKT +A A A E G VPF + GS+
Sbjct: 356 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSD 390
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 266 KKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN 436
K+ RA LL GPPGTGK+ +A A+A E + F + S++ S + ++E L+ N
Sbjct: 161 KRRPWRAFLLYGPPGTGKSYLAKAVATEADS--TFFSVSSSDLVSKWMGESEKLVSN 215
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELG 355
R S L+R G +LLL GPPG GKT + +A+ LG
Sbjct: 184 RGSANLLRDLVQDGNSLLLIGPPGVGKTTMIREVARMLG 222
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
R +LL GPPGTGKT +A AIA+E G
Sbjct: 556 RGILLFGPPGTGKTMLAKAIAKEAG 580
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
R +LL GPPGTGKT +A AIA+E G
Sbjct: 551 RGILLFGPPGTGKTMLAKAIAKEAG 575
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
+ + + G+ LLL GPPGTGKT I AIA E K F + S + S I + E L+
Sbjct: 35 IFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGE--AKATFFYISASSLTSKWIGEGEKLV 91
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
+ +LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 292
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 448
+ +L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 515 KGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANVREIFDKA 569
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
R +LL GPPGTGKT +A AIA E G
Sbjct: 449 RGILLFGPPGTGKTMMAKAIANEAG 473
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPM 379
RA+L GPPGTGKT+ A IA + G + + P+
Sbjct: 362 RAVLFEGPPGTGKTSCARVIANQAGIPLLYVPL 394
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 448
+ +L+ GPPGTGKT++A A+ G V F + G E+ S + ++E L E FR A
Sbjct: 419 KGVLIHGPPGTGKTSLARTFARHSG--VNFFSVNGPEIISQYLGESEKALDEVFRSA 473
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
+ +LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 243 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 293
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 448
+ +L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 516 KGVLFYGPPGCGKTLLAKAIANE--CQANFISIKGPELLTMWFGESEANVREIFDKA 570
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
+ +LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 292
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 448
+ +L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 515 KGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANVREIFDKA 569
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 400
+ +LL GPPGTGKT +A A+A E G F + GS + S
Sbjct: 186 KGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTS 223
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 400
+ +LL GPPGTGKT +A A+A E G F + GS + S
Sbjct: 387 KGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTS 424
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ +LL GPPGTGKT +A AIA E G +PF G++
Sbjct: 350 KGVLLHGPPGTGKTLLAKAIAGEAG--LPFFAANGTD 384
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 400
+L GPPG GKT +A AIA E G VPF + +EV S
Sbjct: 270 ILFHGPPGCGKTKLANAIANEAG--VPFYKISATEVIS 305
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 448
LL GPPG GKT IA A A E G F + G+E+ + + ++E+ + F+RA
Sbjct: 566 LLYGPPGCGKTLIAKAAANEAGAN--FMHIKGAELLNKYVGESELAIRTLFQRA 617
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
L + R LLL GPPG GKT +A A+A E ++ F + S + S + + E L++
Sbjct: 241 LFTGLRRPARGLLLFGPPGNGKTMLAKAVASE--SQATFFNVSASSLTSKWVGEAEKLVK 298
Query: 434 N-FRRAIGLRIRETKEVYEGEVTEL 505
F+ AI R+ ++ E+ +
Sbjct: 299 TLFQVAIS---RQPSVIFMDEIDSI 320
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGT 358
+ +L+ GPPGTGKT +A A+A E GT
Sbjct: 273 KGVLMFGPPGTGKTLLAKAVATECGT 298
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
+ LL GPPGTGKT +A A A E + VPF + GS+
Sbjct: 361 KGALLVGPPGTGKTLLAKATAGE--SAVPFLSISGSD 395
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
+ +LL GPPGTGKT +A AIA+E G
Sbjct: 120 KGVLLYGPPGTGKTMLAKAIAKESG 144
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTK-VPFCPMVGSEVYSTEIKKTEVLMENFRRA 448
R LLL GPPGTGKT++ A+ QE + P ++ E +K VL E F A
Sbjct: 57 RGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEK--VLREAFAEA 111
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 421
+ +LL GPPGTGKT +A I + L K P + G EV S + +TE
Sbjct: 251 KGMLLFGPPGTGKTLMARQIGKMLNGKDPKI-VNGPEVLSKFVGETE 296
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
LL GP G+GKTA+A I + + P+ +V +E
Sbjct: 534 LLEGPSGSGKTALAATIG--IDSDFPYVKIVSAE 565
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
+ +LL GPPGTGKT +A A+A E G
Sbjct: 999 KGILLFGPPGTGKTMLAKAVATEAG 1023
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
+ +LL GPPGTGKT +A A+A E G
Sbjct: 986 KGILLFGPPGTGKTMLAKAVATEAG 1010
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/47 (44%), Positives = 26/47 (55%)
Frame = +2
Query: 251 RLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R +R R +LL G PGTGKT +A A+A E + VPF SE
Sbjct: 353 RYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--SDVPFISCSASE 397
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGT 358
+ +LL GPPGTGKT +A A+A E T
Sbjct: 146 KGILLFGPPGTGKTMLAKAVATECNT 171
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGT 358
+ +LL GPPGTGKT +A A+A E T
Sbjct: 137 KGILLFGPPGTGKTMLAKAVATECNT 162
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 260 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+S K R ++ GPPGTGKT +A IA++ G + + M G +V
Sbjct: 379 KSHKAPFRNMMFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 421
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
R+ + +R R +LL G PGTGKT +A A+A E +VPF SE
Sbjct: 345 RNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASE 393
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQEL 352
L+L+GPPGTGKT LA+A EL
Sbjct: 51 LILSGPPGTGKTTSILALAHEL 72
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
+ +LL GPPGTGKT +A AIA+E
Sbjct: 123 KGVLLYGPPGTGKTMLAKAIARE 145
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 448
+ +LL GPPGTGKT +A AIA + F +V S + I + ++ E F A
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGESARLIREMFNYA 228
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 412
G+ + L+GPPG GKT+I +IA+ L K F VG EIK
Sbjct: 457 GKIICLSGPPGVGKTSIGRSIARALNRKF-FRFSVGGLADVAEIK 500
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 231
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 231
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQE 349
+ +LL GPPGTGKT +A A+A+E
Sbjct: 856 KGILLFGPPGTGKTMLAKAVAKE 878
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 260 RSKKMAGRALLLAGPPGTGKTAIALAIAQELG 355
R K+ G +LL GPPG GKT +A A+A E G
Sbjct: 438 RGVKIPG-GILLCGPPGVGKTLLAKAVAGEAG 468
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV---GSEVYSTEIKKTEVLMENFRRA 448
GR LL GPPG+GK+ + LA+A +L + + G + +K+T +
Sbjct: 186 GRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNH 245
Query: 449 IG-LRIRET 472
I L +RET
Sbjct: 246 IAELTVRET 254
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQEL 352
LLL GPPGTGKT+ LA+A++L
Sbjct: 75 LLLYGPPGTGKTSTILAVARKL 96
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 448
+ +LL GPPGTGKT +A AIA + F +V S + I + ++ E F A
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGESARLIREMFNYA 228
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 421
+LL GPPGTGKT +A A+A E + F + G E+ + I ++E
Sbjct: 694 VLLYGPPGTGKTLLAKAVATE--CSLNFLSVKGPELINMYIGESE 736
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R LL GPP +GKT + LA+A LGT +
Sbjct: 162 RLTLLLGPPSSGKTTLLLALAGRLGTNL 189
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 448
+ +L GPPG+GKT +A A+A G F +VGSE+ I + ++ E F+ A
Sbjct: 240 KGVLCYGPPGSGKTLVARAVANRTG--ACFIRVVGSELVQKYIGEGARMVRELFQMA 294
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +L GPPGTGKT +A A+A T F ++GSE+
Sbjct: 203 KGVLCYGPPGTGKTLLARAVANR--TDACFIRVIGSEL 238
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQEL 352
+L GPPGTGKT ALAIA +L
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQL 54
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQEL 352
+L GPPGTGKT ALAIA +L
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQL 66
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTK 361
G L GPPG GKT++A +IA LG K
Sbjct: 401 GPVLCFVGPPGVGKTSLASSIAAALGRK 428
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 260 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+S + R ++ GPPGTGKT +A IA++ G + + M G +V
Sbjct: 364 KSHQAPFRNMMFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 406
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ ++L G PGTGKT +A A+A T F +VGSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ ++L G PGTGKT +A A+A T F +VGSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/42 (38%), Positives = 29/42 (69%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 364
R+ R++R+ +++ + +LL G PG GKT++ LA+ + G KV
Sbjct: 1733 RNVLRVLRAMQLS-KPILLEGSPGVGKTSLILALGKYSGHKV 1773
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPM 379
R +LL GP G+GK+A+ +A E G V F M
Sbjct: 354 RPVLLYGPSGSGKSALIRKLADESGNHVVFIHM 386
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTK 361
G+ + L+GPPG GKT+I +IA+ L K
Sbjct: 440 GKIICLSGPPGVGKTSIGRSIARALDRK 467
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS-TEIKKTEVLMENFRRAI 451
R LL GPPGTGK+++ A+A LG + + +EV+S +E++K +LM+ ++I
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL--TEVHSNSELRK--LLMKTSSKSI 291
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGKT++ AIA L
Sbjct: 246 RGYLLYGPPGTGKTSLVAAIANYL 269
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
R +LL GPPGTGKT A +A++ G + + M G +V
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSG--LDYALMTGGDV 433
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 275 AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
A R +L+ G GTGKT++ALAIA E +VP + E+
Sbjct: 456 APRGVLIVGERGTGKTSLALAIAAE--ARVPVVNVEAQEL 493
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
R LL GPPGTGK+++ A+A LG
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLG 263
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT +A A A + T F + G ++
Sbjct: 206 KGVLLYGPPGTGKTLMARACAAQ--TNATFLKLAGPQL 241
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKV 364
+LL GP GTGKT +A A+A E G +
Sbjct: 773 ILLFGPSGTGKTMLAKAVATEAGANL 798
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQEL 352
GR LL GPP +GKT + LA+A +L
Sbjct: 197 GRMTLLLGPPSSGKTTLLLALAGKL 221
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQEL 352
GR LL GPP +GKT + LA+A +L
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKL 204
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
+ +LL GPPGTGKT +A A A + T F + G ++
Sbjct: 205 KGVLLYGPPGTGKTLMARACAAQ--TNATFLKLAGPQL 240
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+++ AIA L
Sbjct: 248 RGYLLYGPPGTGKSSLIAAIANHL 271
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 31.9 bits (69), Expect = 0.40
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV--GSEVYSTEI--KKTE 421
+IR K+M LL GPPG GKT + LA++ L + V ++S + K +
Sbjct: 158 IIRPKRMT----LLLGPPGCGKTTLLLALSGRLDPSLKTRGEVSYNGHLFSEFVPEKTSS 213
Query: 422 VLMENFRRAIGLRIRETKE---VYEGEVTELTLLKQ 520
+ +N L +RET + ++G + L ++K+
Sbjct: 214 YVSQNDLHIPELSVRETLDFSGCFQGAGSRLEMMKE 249
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYST-EIKKTEVLMENFRRAI 451
R LL GPPGTGK+++ A+A L K + S +Y E+K+ VL+ R+I
Sbjct: 244 RGYLLYGPPGTGKSSLIAAMANYL--KFDVFDLELSSIYDNGELKR--VLLSTTNRSI 297
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 394
R +L GPPGTGKT A +A+ G + + M G +V
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSG--LDYALMTGGDV 434
>At3g25620.1 68416.m03189 ABC transporter family protein similar to
GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
6 (4), 343-356 (1997))
Length = 467
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKK 415
G L + GP G+GKT + A+A L K+ E +++ +K+
Sbjct: 110 GELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKR 155
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+++ AIA +
Sbjct: 240 RGYLLYGPPGTGKSSMVAAIANHM 263
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 433
GR LL GPPG GKT + A++ + V VG EV +E + E
Sbjct: 167 GRMTLLLGPPGCGKTTLLQALSGKFSDSV----KVGGEVCYNGCSLSEFIPE 214
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTKV 364
GR LL GPPG GKT + A++ L V
Sbjct: 164 GRMTLLLGPPGCGKTTLLQALSGRLSHSV 192
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIA 343
R LL GPPGTGK+++ AIA
Sbjct: 32 RGYLLYGPPGTGKSSLVAAIA 52
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+++ A+A L
Sbjct: 300 RGYLLYGPPGTGKSSLIAAMANHL 323
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 451
R LL GPPGTGK+++ A+A L K + S +Y K+ +L+ R+I
Sbjct: 245 RGYLLYGPPGTGKSSLIAAMANYL--KFDVFDLELSSIYENAQLKS-ILLSTTNRSI 298
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+++ A+A L
Sbjct: 254 RGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+++ A+A L
Sbjct: 254 RGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+++ A+A L
Sbjct: 246 RGYLLYGPPGTGKSSLVAAMANYL 269
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 421
+ L + G G GKT + A+ + K + P + +YS E K+ E
Sbjct: 115 KTLAIVGKYGVGKTTLCQAVFNDEDVKQVYFPRIWVSMYSKETKEDE 161
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R LL GPPGTGK+ + A+A L +
Sbjct: 237 RGYLLHGPPGTGKSTMIAAMANHLNYSI 264
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTK 361
G+ + L+GP G GKT+I +IA+ L K
Sbjct: 449 GKIICLSGPTGVGKTSIGRSIARALDRK 476
>At5g66005.2 68418.m08311 Expressed protein
Length = 164
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTKVP 367
G+ LL+ GPPG GKT + + + + P
Sbjct: 5 GKCLLVTGPPGVGKTTLIMRVLDMMRVSNP 34
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELG 355
+A+LL+G PG GKT A ++Q LG
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLG 418
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+ + AIA L
Sbjct: 244 RGYLLFGPPGTGKSTMIAAIANFL 267
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPP +GKT + LA+A +L
Sbjct: 174 RMTLLLGPPSSGKTTLLLALAGKL 197
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQEL 352
GR LL GPPG GKT + A++ L
Sbjct: 165 GRLTLLLGPPGCGKTTLLKALSGNL 189
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPP +GKT + LA+A +L
Sbjct: 196 RMTLLLGPPSSGKTTLLLALAGKL 219
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+++ A+A L
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYL 261
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV 382
R + + GPPG GKT IA + + PF ++
Sbjct: 235 RMIGILGPPGIGKTTIATCMFDRFSRRFPFAAIM 268
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+ + AIA L
Sbjct: 229 RGYLLFGPPGTGKSTMISAIANFL 252
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +2
Query: 251 RLIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 430
R + K GR + GP G GKT A L K P C M G + + +++ +
Sbjct: 517 RCVTGKLSPGRVSAVMGPSGAGKTTFLTA----LTGKAPGCIMTGMILVNGKVES----I 568
Query: 431 ENFRRAIG 454
+++++ IG
Sbjct: 569 QSYKKIIG 576
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV 382
R + + GPPG GKT IA + ++ K F +
Sbjct: 256 RMIGILGPPGIGKTTIARVLYDQISEKFQFSAFI 289
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R+ L GPPGTGK+++ A+A L
Sbjct: 221 RSYFLYGPPGTGKSSLVAAMANYL 244
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 257 IRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 364
I + GR + + G PGTGKT L++ + L +V
Sbjct: 452 ISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEV 487
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 257 IRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 364
I + GR + + G PGTGKT L++ + L +V
Sbjct: 457 ISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEV 492
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R LL GPPGTGK+ + A+A L +
Sbjct: 237 RGYLLYGPPGTGKSTMIAAMANLLNYSI 264
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQELGTKV 364
LL+ GP G+GK+A A A+E G K+
Sbjct: 388 LLIVGPAGSGKSAAIHACAKEQGFKI 413
>At5g62960.1 68418.m07899 expressed protein
Length = 347
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = -2
Query: 596 VWYPWPFLVL*SHEI-LFFHSLQ----PGFSVSTVLTQLLHPHILLWF 468
+W+P+PFL L SH L++ S+ P + +L +L H + WF
Sbjct: 292 IWWPYPFLDLSSHYAPLWYFSVAVMHLPCYGAFALLVKLKHRLLQRWF 339
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+ + A+A L
Sbjct: 244 RGYLLFGPPGTGKSTMIAAMANLL 267
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R LL GPPGTGK+ + A+A L +
Sbjct: 242 RGYLLYGPPGTGKSTMISAMANLLNYNI 269
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 269 KMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVY 397
K +LLAG G GKT + +A L + C ++ +VY
Sbjct: 173 KSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVY 215
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGT 358
GR LL GPPG+GK+ + A++ + T
Sbjct: 172 GRLTLLLGPPGSGKSTLLKALSGKTET 198
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+ + A+A L
Sbjct: 241 RGYLLFGPPGTGKSTMIAAMANFL 264
>At3g25920.1 68416.m03231 50S ribosomal protein L15, chloroplast
(CL15) identical to GB:P25873 from [Arabidopsis
thaliana]
Length = 277
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +2
Query: 449 IGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYES 628
+ ++ ET EG+ L LKQK L G+ + L T + + +L + +
Sbjct: 161 VNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFST 220
Query: 629 LPKEKVEVWGMSFTL 673
KEK+E G + T+
Sbjct: 221 QAKEKLEASGCTLTV 235
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 245 SCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 352
S +IR G ++L+ G PG GKT + IA+ L
Sbjct: 202 SAEIIRDLIEGGGSILVIGSPGVGKTTLIREIARML 237
>At3g10420.1 68416.m01249 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 547
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 245 SCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 352
S +IR G ++L+ G PG GKT + IA+ L
Sbjct: 202 SAEIIRDLIEGGGSILVIGSPGVGKTTLIREIARML 237
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIA-QEL--GTKVPFC 373
LL GPPGTGKT + I QE+ G+K+ C
Sbjct: 209 LLHGPPGTGKTTTVVEIVLQEVKRGSKILAC 239
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 352
++R K R + ++GP G GKT IA A+ +L
Sbjct: 196 ILRLKSEKARMVGISGPSGIGKTTIAKALFSKL 228
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 254 LIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 352
+IR K+M LL GPP GKT + LA++ L
Sbjct: 160 IIRPKRMT----LLLGPPSCGKTTLLLALSGRL 188
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 352
R L R ++ +G L L GP G GKT +A A+A++L
Sbjct: 552 RSRVGLGRPQQPSGSFLFL-GPTGVGKTELAKALAEQL 588
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 439
R++ + G G GKT IA I +++ + C ++ E+K + + ENF
Sbjct: 838 RSIGIWGTVGIGKTTIAEEIFRKISVQYETCVVLKDLHKEVEVKGHDAVRENF 890
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIA 343
R LL GPPGTGK+ + A+A
Sbjct: 237 RGYLLYGPPGTGKSTMIAAMA 257
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPPGTGK+ + A+A L
Sbjct: 240 RGYLLFGPPGTGKSTMISAMANFL 263
>At2g34470.1 68415.m04231 urease accessory protein (UREG) identical
to urease accessory protein UREG GI:4324678 from
[Arabidopsis thaliana]; contains Pfam profile: PF01495
HypB/UreG nucleotide-binding domain
Length = 275
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 293 LAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTE 406
+ GP GTGKTA+ LA+ + L K V +++++ E
Sbjct: 78 IGGPVGTGKTALMLALCRFLRDKYSLA-AVTNDIFTKE 114
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 239 RDSCRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 352
R L R ++ G L L GP G GKT +A A+A++L
Sbjct: 587 RSRAGLGRPQQPTGSFLFL-GPTGVGKTELAKALAEQL 623
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +2
Query: 254 LIRSKKMAGR--ALLLAGPPGTGKTAIALAI 340
L+RS + R +++ GPPGTGKT+IA ++
Sbjct: 127 LLRSAVESNRLPSIVFWGPPGTGKTSIAKSL 157
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
+ LLL G PG GKT +A A+ G +V
Sbjct: 346 KILLLCGAPGLGKTTLAHIAAKHCGYRV 373
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 293 LAGPPGTGKTAIALAIAQELGT 358
L G PG GKTAIA +AQ + +
Sbjct: 300 LIGEPGVGKTAIAEGLAQRIAS 321
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQEL 352
L+ GPPGTGKT + AI +
Sbjct: 507 LIQGPPGTGKTVTSAAIVYHM 527
>At5g45440.1 68418.m05583 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 346
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKK 415
++L++ G G GKTA+ I + + + P + ++S E K+
Sbjct: 79 KSLVVVGEYGVGKTALCQQIFNDYDVRNAYAPRIWVSMHSNESKE 123
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 299 GPPGTGKTAIALAIAQELGTKVPFCPMVGS 388
GP G GKT IA A+ +L T F +G+
Sbjct: 212 GPAGIGKTTIARALYNQLSTNFQFKCFMGN 241
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R + + GPPG GKT IA A+ ++
Sbjct: 215 RMIGIVGPPGIGKTTIARALRDQI 238
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 248 CRLIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 352
C I S++ +L+ G PG GKTAI+ +AQ +
Sbjct: 266 CIQILSRRTKNNPVLI-GEPGVGKTAISEGLAQRI 299
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQ 346
+L+ GPPG+GKT +A A A+
Sbjct: 596 ILIYGPPGSGKTILARAAAK 615
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 293 LAGPPGTGKTAIALAIAQELGT 358
L G PG GKTAIA +AQ + +
Sbjct: 321 LIGEPGVGKTAIAEGLAQRIAS 342
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 251 RLIRSKKMAGRALLLAGPPGTGKTAIALAIA 343
R + K M GR + GP G GKT A+A
Sbjct: 483 RSVTGKIMPGRVSAVMGPSGAGKTTFLSALA 513
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 504 NSVTSPSYTSLVSRIRRPIARRKFSINTSVFLISVL*TSLP 382
NSV+SP T S R P +RR +TS F +S+ +S P
Sbjct: 630 NSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYP 670
Score = 27.5 bits (58), Expect = 8.7
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Frame = +2
Query: 275 AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV--YSTE-IKKTEVLMENFRR 445
AG+ L L GP G GK+++ I + + G ++ Y+ + I+K ++
Sbjct: 1051 AGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAIVPQEPC 1110
Query: 446 AIGLRIRETKEVYEGEVTELTLLKQKILAGGYGKTVSHVIIGLKTAKGTKQLKL 607
G I E TE +++ LA + K +S + G KT G + ++L
Sbjct: 1111 LFGTTIYENIAYGHECATEAEIIQAATLASAH-KFISALPEGYKTYVGERGVQL 1163
>At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containing
protein
Length = 528
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -2
Query: 224 RLLTHETGCHLNR----NTIFIQPQAFYMTVSRDPLRFS 120
+L TH+ GC++ + NT+ +Q + +SRD LR S
Sbjct: 368 QLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLS 406
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 260 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 364
+ K + ++++GP G GK+ +A+ +A+ L ++
Sbjct: 44 KKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEI 78
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 260 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 364
+ K + ++++GP G GK+ +A+ +A+ L ++
Sbjct: 44 KKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEI 78
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAI 340
+L+ GPPGTGKT L+I
Sbjct: 276 VLIQGPPGTGKTQTILSI 293
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQEL 352
GR LL GPP GKT + A++ L
Sbjct: 200 GRLTLLLGPPSCGKTTLLKALSGNL 224
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPP +GKT + A+A +L
Sbjct: 200 RMTLLLGPPSSGKTTLLQALAGKL 223
>At2g07710.1 68415.m00998 hypothetical protein
Length = 150
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 234 PHVQTLDPRDRLPFE*EHHFHPTPSLLYDCEQRS 133
PH +LDP L + E H HP ++ DC+ +S
Sbjct: 84 PHHHSLDPS--LCHQVEFHHHPPLDIILDCQLQS 115
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R LL GPP +GKT + A+A +L
Sbjct: 202 RMTLLLGPPSSGKTTLLQALAGKL 225
>At1g53460.1 68414.m06060 expressed protein
Length = 314
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 365 PFC-PMVGSEVYSTEIKKTEVLMENFRRAIGLRIR-ETKEVYEGEVTELTLLKQKIL 529
P C P++ S +++E + L F A+GLR + ET E+ E E E LK+K+L
Sbjct: 21 PQCAPLIVSRNFTSEEAYKKPLSVFFEEAVGLRPKSETSEI-EEEEEEGNELKRKLL 76
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQEL 352
L+ GPPGTGKT +AI L
Sbjct: 1128 LIQGPPGTGKTRTIVAIISGL 1148
>At5g63590.1 68418.m07983 flavonol synthase, putative similar to
SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1)
{Arabidopsis thaliana}; contains Pfam profile PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 308
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 386 SEVYSTEIKK-TEVLMENFRRAIGLRIRETKEVYEGEVTE 502
+E Y++ IKK +E +ME +GLR KE GE E
Sbjct: 130 NEEYASHIKKLSEKIMEWLSEGLGLRHEALKEGLGGETIE 169
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 287 LLLAGPPGTGKTAIALAIAQ 346
LL+ G PGTGK+ A A+A+
Sbjct: 16 LLITGTPGTGKSTTASALAE 35
>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 692
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 245 SCRLIRSKKMAGRALLLAGPPGTGKT 322
SC IR+ L+ GPPGTGKT
Sbjct: 84 SCLKIRNCNHKHSVKLIWGPPGTGKT 109
>At5g09430.1 68418.m01092 hydrolase, alpha/beta fold family protein
low similarity to hydrolases from Rhodococcus sp. EtbD1
GI:3273239, EtbD2 GI:3273241; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 303
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 568 YDHMRY--CFSIASSQDFLFQQ 509
+DHM+ CFS +S+D+LF+Q
Sbjct: 2 FDHMKLLRCFSFTASRDWLFRQ 23
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) identical
to peroxisomal ABC transporter PXA1 GI:15320529 from
[Arabidopsis thaliana]; contains Pfam profile PF00005:
ABC transporter;
Length = 1337
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +2
Query: 272 MAGRALLLAGPPGTGKTAI 328
++G++LL+ GP G+GKT++
Sbjct: 1121 VSGKSLLVTGPNGSGKTSV 1139
>At4g39540.2 68417.m05591 shikimate kinase family protein similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 300
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELG 355
GR++ L G G+GKT + +A+ LG
Sbjct: 98 GRSMYLVGMMGSGKTTVGKIMARSLG 123
>At4g39540.1 68417.m05590 shikimate kinase family protein similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 300
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELG 355
GR++ L G G+GKT + +A+ LG
Sbjct: 98 GRSMYLVGMMGSGKTTVGKIMARSLG 123
>At4g14746.1 68417.m02269 expressed protein
Length = 250
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -1
Query: 603 LSCLVPLAVFSPMIT*DTVFP*PPAR--IFCFNSVNSVTSPSYTSLVSRIRRPIARRKFS 430
L C+ P SP+IT P PP + I F S+ S R P+ RR
Sbjct: 66 LPCITPNCNISPLITASPAQPKPPPKDNITSFFDRKSLISFFLCFSGPRHIVPVGRRSEH 125
Query: 429 INTSVF 412
+N S+F
Sbjct: 126 VNISLF 131
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQELGTKV 364
R LL G PG GKT++ AIA+ L V
Sbjct: 200 RYYLLHGLPGAGKTSLVAAIAKYLNFDV 227
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 281 RALLLAGPPGTGKTAIALAIAQEL 352
R +LL G PGTGKT + A+ L
Sbjct: 754 RGILLHGHPGTGKTLVVRALIGSL 777
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 290 LLAGPPGTGKTAIALAIAQEL 352
++ G PG GKTAIA +AQ +
Sbjct: 284 VIIGEPGVGKTAIAEGLAQRI 304
>At2g19490.1 68415.m02278 recA family protein contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 430
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 391
GR + + GP +GKT +AL + E + C V +E
Sbjct: 112 GRVVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAE 149
>At1g33290.2 68414.m04118 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 303
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQEL 352
G+++L G PG GKT + IA+ L
Sbjct: 164 GKSILFVGRPGVGKTTVLREIARVL 188
>At1g33290.1 68414.m04117 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 379
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 278 GRALLLAGPPGTGKTAIALAIAQEL 352
G+++L G PG GKT + IA+ L
Sbjct: 164 GKSILFVGRPGVGKTTVLREIARVL 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,222
Number of Sequences: 28952
Number of extensions: 316627
Number of successful extensions: 1166
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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