Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060455.seq
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0796 - 21300251-21300373,21300846-21301721                       32   0.48 
01_01_1204 + 9689855-9690844                                           31   0.63 
08_02_0080 + 12024505-12024942                                         31   1.1  
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973...    29   2.6  
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613...    29   3.4  
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...    29   4.5  
01_05_0798 - 25322213-25322333,25322536-25322816                       29   4.5  
03_02_0853 + 11786022-11786105,11786509-11786592,11786915-11787925     28   7.8  

>08_02_0796 - 21300251-21300373,21300846-21301721
          Length = 332

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 5/29 (17%)
 Frame = +3

Query: 306 DGDFDDADMSNLDDDR-----QAPPPMLN 377
           D D +D++MS+ DDDR     QAPPP+L+
Sbjct: 167 DDDSEDSEMSDYDDDRSASPLQAPPPVLS 195


>01_01_1204 + 9689855-9690844
          Length = 329

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 252 LTCPYCASGFIEQLES 299
           + CPYC SGF+E++ES
Sbjct: 32  IKCPYCHSGFVEEIES 47


>08_02_0080 + 12024505-12024942
          Length = 145

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 460 IIQSNCSRIVSLLPVFRYRPPVIRNAKSLSIG 365
           ++  N    V++LP+FR R PV   +K LS+G
Sbjct: 19  LVDCNIGTEVAILPIFRLRTPVSGTSKILSMG 50


>06_03_0593 +
           22596372-22596384,22596856-22597037,22597119-22597344,
           22597429-22597855,22598075-22598429,22598511-22599089
          Length = 593

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 291 LESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTGGR 407
           LES+ + D DD +  +LD+D +    + +DLA  M   R
Sbjct: 244 LESDWNSDSDDEESDDLDEDNRGMAQIRDDLAGAMWNNR 282


>07_03_0681 +
           20659789-20659839,20660030-20660170,20661294-20661399,
           20661625-20661806,20661888-20662113,20662198-20662624,
           20662844-20663189,20663271-20663849
          Length = 685

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 291 LESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTGGR 407
           LES+ + D DD +  +LD+D +    + +DLA  M   R
Sbjct: 339 LESDWNSDSDDEEPDDLDEDNRGMAQIRDDLAGAMWNNR 377


>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 274 LAQYGHVNPAKHLQILYHTCGR 209
           LA Y  VNP KH   L HT GR
Sbjct: 29  LADYLAVNPTKHATYLPHTAGR 50


>01_05_0798 - 25322213-25322333,25322536-25322816
          Length = 133

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 294 ESEADGDFDDADMSNLDDDRQAPPP 368
           ESE+D D DD   S+  DD   P P
Sbjct: 39  ESESDSDSDDGQKSDSSDDEALPVP 63


>03_02_0853 + 11786022-11786105,11786509-11786592,11786915-11787925
          Length = 392

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 258 CPYCASGFIEQLESEADGDFDDADMS 335
           CP+C SGF+E++     GD DD   S
Sbjct: 103 CPHCHSGFVEEM---VGGDDDDGRRS 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,113
Number of Sequences: 37544
Number of extensions: 338877
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)