Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060455.seq
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45010| Best HMM Match : Chromadorea_ALT (HMM E-Value=7.3)           31   0.64 
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     29   3.4  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            29   3.4  
SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_45010| Best HMM Match : Chromadorea_ALT (HMM E-Value=7.3)
          Length = 214

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 294 ESEADGDFDDADMSNLDDDRQAPPPML 374
           E + DG+ DD D SN DDD  A PP++
Sbjct: 102 EDDDDGNDDDDDDSNDDDDDSAVPPVV 128


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 150 TTAPINTYYLNSIPKDCALNFQQKFNNRHFFEHSQSMDFLKK 25
           T    N Y+ +S  + C LN+Q K     +F+  +++D+ +K
Sbjct: 412 TCRSYNYYHDDSDQQVCELNYQTKQGKESYFKQDKTVDYYQK 453


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 372 ALVVVPGDHRPSCSYLHRQNHHPLHSPIAL*NH*HNMGMLI 250
           +++++   H PS S +   +HHP  S I +  H H   ++I
Sbjct: 148 SIIIIHHHHHPSSSIIIIHHHHPSSSSIIIIIHHHPSSIII 188


>SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 428 RYNPRTVTLDDGSREAGHWC-YNCWCTIVLVGAPGDYVFG--GEG 553
           RY+ R   ++D   +  H    +CW T+V+VG  G+ +    GEG
Sbjct: 130 RYDIRHAVVNDSDAKMWHTLGVSCWPTLVIVGPGGELLLSLVGEG 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,912,172
Number of Sequences: 59808
Number of extensions: 386633
Number of successful extensions: 1277
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)