Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060455.seq
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.28 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 321 DADMSNLDDDRQAPPPMLNDLAFLMTGGRYRNTGR 425
           +AD+  L D R +P P + + + L++G     TGR
Sbjct: 366 EADIIELQDLRMSPLPSIRNRSGLVSGSSTPGTGR 400



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/30 (20%), Positives = 18/30 (60%)
 Frame = +2

Query: 134 FIGAVVLINLTWLTQW*NEDQHYGFSATGV 223
           ++ +++++ L+W++ W N +      A G+
Sbjct: 249 YLPSILIVMLSWVSFWINHEATSARVALGI 278


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 262 GHVNPAKHLQILYHTCGRKTVVL 194
           G + P KH Q L    G  TVVL
Sbjct: 279 GQIKPRKHEQRLLRNVGVHTVVL 301


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 348 HRPSCSYLHRQNHHPLH 298
           H     Y H+Q+HH LH
Sbjct: 798 HAAQMIYGHQQSHHGLH 814


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,005
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)