Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060455.seq
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger) fa... 33 0.17
At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger) fa... 31 0.53
At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger) fa... 31 0.53
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At2g29910.2 68415.m03633 F-box family protein contains F-box dom... 29 2.8
At2g29910.1 68415.m03632 F-box family protein contains F-box dom... 29 2.8
At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR... 29 3.7
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 4.9
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin... 27 8.6
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 27 8.6
At3g62270.1 68416.m06996 anion exchange family protein contains ... 27 8.6
At1g79190.1 68414.m09233 expressed protein 27 8.6
>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 351
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 246 AGLTCPYCASGFIEQLESEADGDFDDADMSNLDDDRQAPPPMLNDL 383
A + CP+C SGF+E++E D D D +D +++ + P+L +L
Sbjct: 24 AEIKCPFCQSGFVEEMED--DDDHDSSDPADVRANNSLWAPILMEL 67
>At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 395
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 246 AGLTCPYCASGFIEQLESEAD 308
AG+ CPYC GFIE++E ++
Sbjct: 50 AGVLCPYCNGGFIEEIEDSSN 70
>At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 31.5 bits (68), Expect = 0.53
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 246 AGLTCPYCASGFIEQLESEADG 311
A + CP+C SGF+E++ E +G
Sbjct: 20 AEIKCPFCQSGFVEEMSREING 41
>At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 31.5 bits (68), Expect = 0.53
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 246 AGLTCPYCASGFIEQLESEADG 311
A + CP+C SGF+E++ E +G
Sbjct: 20 AEIKCPFCQSGFVEEMSREING 41
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 252 LTCPYCASGFIEQLESEADG 311
+ CP+C SGFIE++ G
Sbjct: 26 IKCPFCQSGFIEEMSGNGGG 45
>At2g29910.2 68415.m03633 F-box family protein contains F-box domain
Pfam:PF00646
Length = 335
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 285 EQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTG 401
E+L E G + D D S DD+ P+L D+ L+TG
Sbjct: 260 ERLRDEKAGGYGDCD-SVYDDEEYPDDPILGDVTNLVTG 297
>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
Pfam:PF00646
Length = 352
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 285 EQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTG 401
E+L E G + D D S DD+ P+L D+ L+TG
Sbjct: 260 ERLRDEKAGGYGDCD-SVYDDEEYPDDPILGDVTNLVTG 297
>At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. False intron
created at intron 2 to escape a frameshift in the BAC
sequence.
Length = 1165
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 515 QVQWCTSSCSTSARPPGSHHPE*LFEDCISSTCVSVPTSRHQEC 384
+V WC + S +A + P+ L + SS CV R C
Sbjct: 911 EVSWCNKTISVAAATADNIQPKLLVSEASSSLCVQKSVVRFINC 954
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 294 ESEADGDFDDADMSNLDDD 350
E E DGD DD D S+ DDD
Sbjct: 127 ECEDDGDDDDGDSSDSDDD 145
>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 465
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 279 FIEQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTGG 404
F ++ + E D D D+ D DD+ PP N + +M GG
Sbjct: 223 FSDEFDDEFDEDDDEFDDDLEDDEFDDHPPPPNKMKPMMGGG 264
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 279 FIEQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTGG 404
F ++ + E D D D+ D DD+ PP N + +M GG
Sbjct: 223 FSDEFDDEFDEDDDEFDDDLEDDEFDDHPPPPNKMKPMMGGG 264
>At3g62270.1 68416.m06996 anion exchange family protein contains
similarity to anion exchanger 3, cardiac splice form -
Rattus norvegicus, PIR:A42497
Length = 703
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 515 VGAPGDYVFGGEGLDAVVTQLLGQFGELRAXXSTTGSASPHYHRRYSR 658
+G+ Y E LD +T+ G+F + T+ +++P Y+R S+
Sbjct: 619 MGSTASYPCDSEILDEFITRSRGEFRHTCSPKVTSSTSTPVYNRNLSQ 666
>At1g79190.1 68414.m09233 expressed protein
Length = 1274
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 453 RVTVRGLYLFYLCFGTDLPSSGMLN 379
+V + G+ +F LC G D SSG L+
Sbjct: 739 QVIIEGVGVFSLCLGKDFASSGFLH 763
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,817,306
Number of Sequences: 28952
Number of extensions: 266822
Number of successful extensions: 767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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