Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060454.seq
         (308 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q969Q0 Cluster: 60S ribosomal protein L36a-like; n=88; ...    66   1e-10
UniRef50_P83881 Cluster: 60S ribosomal protein L36a; n=44; Fungi...    65   3e-10
UniRef50_A7P2V5 Cluster: Chromosome chr1 scaffold_5, whole genom...    62   3e-09
UniRef50_P48166 Cluster: 60S ribosomal protein L44; n=79; Eukary...    62   3e-09
UniRef50_Q3LWA2 Cluster: Ribosomal protein L44; n=1; Bigelowiell...    58   5e-08
UniRef50_O15576 Cluster: Ribosomal protein L44; n=1; Entamoeba h...    56   2e-07
UniRef50_A2DAI6 Cluster: 60S ribosomal protein L44, putative; n=...    54   8e-07
UniRef50_Q9YF00 Cluster: 50S ribosomal protein L44E; n=15; Therm...    44   5e-04
UniRef50_O59603 Cluster: 50S ribosomal protein L44E; n=15; Eurya...    41   0.005
UniRef50_A0RZ36 Cluster: Ribosomal protein L44E; n=1; Cenarchaeu...    40   0.011
UniRef50_Q9HIX1 Cluster: 50S ribosomal protein L44E; n=5; Archae...    38   0.044
UniRef50_A3BKG6 Cluster: Putative uncharacterized protein; n=1; ...    34   0.71 
UniRef50_Q17E08 Cluster: Putative uncharacterized protein; n=1; ...    33   1.6  
UniRef50_Q0V3K3 Cluster: Predicted protein; n=1; Phaeosphaeria n...    31   3.8  
UniRef50_Q01W43 Cluster: Peptidase M50; n=1; Solibacter usitatus...    31   6.6  

>UniRef50_Q969Q0 Cluster: 60S ribosomal protein L36a-like; n=88;
           Eukaryota|Rep: 60S ribosomal protein L36a-like - Homo
           sapiens (Human)
          Length = 106

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 31/64 (48%), Positives = 37/64 (57%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKP 266
           NVPK RRT+C                      AQGRRRYDRKQ GYGGQ+KPIF+K+ K 
Sbjct: 3   NVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKT 62

Query: 267 LRKL 278
            +K+
Sbjct: 63  TKKI 66



 Score = 33.5 bits (73), Expect = 0.94
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +2

Query: 248 QKEAKTTKKIVLRLECAD 301
           +K+AKTTKKIVLRLEC +
Sbjct: 57  RKKAKTTKKIVLRLECVE 74


>UniRef50_P83881 Cluster: 60S ribosomal protein L36a; n=44;
           Fungi/Metazoa group|Rep: 60S ribosomal protein L36a -
           Homo sapiens (Human)
          Length = 106

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 30/64 (46%), Positives = 37/64 (57%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKP 266
           NVPK RRT+C                      AQG+RRYDRKQ GYGGQ+KPIF+K+ K 
Sbjct: 3   NVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKT 62

Query: 267 LRKL 278
            +K+
Sbjct: 63  TKKI 66



 Score = 33.5 bits (73), Expect = 0.94
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +2

Query: 248 QKEAKTTKKIVLRLECAD 301
           +K+AKTTKKIVLRLEC +
Sbjct: 57  RKKAKTTKKIVLRLECVE 74


>UniRef50_A7P2V5 Cluster: Chromosome chr1 scaffold_5, whole genome
           shotgun sequence; n=9; Eukaryota|Rep: Chromosome chr1
           scaffold_5, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 151

 Score = 61.7 bits (143), Expect = 3e-09
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRH--AAQGRRRYDRKQQGYGGQSKPIFKKRQ 260
           NVPK ++TYC                   +   AAQG+RRYDRKQ GYGGQ+KP+F K+ 
Sbjct: 49  NVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKA 108

Query: 261 KPLRKL 278
           K  +K+
Sbjct: 109 KTTKKI 114



 Score = 35.9 bits (79), Expect = 0.18
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +2

Query: 251 KEAKTTKKIVLRLECADCK 307
           K+AKTTKKIVLRL+C  CK
Sbjct: 106 KKAKTTKKIVLRLQCQGCK 124


>UniRef50_P48166 Cluster: 60S ribosomal protein L44; n=79;
           Eukaryota|Rep: 60S ribosomal protein L44 -
           Caenorhabditis elegans
          Length = 105

 Score = 61.7 bits (143), Expect = 3e-09
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA-AQGRRRYDRKQQGYGGQSKPIFKKRQK 263
           NVPK RRT+C                       AQGRRRYDRKQ G+GGQ+KPIF+K+ K
Sbjct: 3   NVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAK 62

Query: 264 PLRKL 278
             +K+
Sbjct: 63  TTKKI 67



 Score = 38.3 bits (85), Expect = 0.033
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 248 QKEAKTTKKIVLRLECADCK 307
           +K+AKTTKKIVLR+EC +CK
Sbjct: 58  RKKAKTTKKIVLRMECTECK 77


>UniRef50_Q3LWA2 Cluster: Ribosomal protein L44; n=1; Bigelowiella
           natans|Rep: Ribosomal protein L44 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 99

 Score = 57.6 bits (133), Expect = 5e-08
 Identities = 28/72 (38%), Positives = 38/72 (52%)
 Frame = +3

Query: 93  PKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKPLR 272
           P+ ++ YC                      AQG+RRYDRKQQGYGGQ+KP+F+K+ K  +
Sbjct: 5   PRNQKKYCKFCKVHVEMKSYEYKPGKASLNAQGKRRYDRKQQGYGGQTKPVFRKQVKNTK 64

Query: 273 KLCSVLSVPIAR 308
           K    LS  I +
Sbjct: 65  KPSIKLSCEICK 76


>UniRef50_O15576 Cluster: Ribosomal protein L44; n=1; Entamoeba
           histolytica|Rep: Ribosomal protein L44 - Entamoeba
           histolytica
          Length = 80

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 22/34 (64%), Positives = 29/34 (85%)
 Frame = +3

Query: 186 QGRRRYDRKQQGYGGQSKPIFKKRQKPLRKLCSV 287
           QG+RRYDRKQQG+GGQ+KP+FKK+ K  R+L  +
Sbjct: 20  QGKRRYDRKQQGFGGQTKPVFKKKAKQQRRLFKI 53


>UniRef50_A2DAI6 Cluster: 60S ribosomal protein L44, putative; n=1;
           Trichomonas vaginalis G3|Rep: 60S ribosomal protein L44,
           putative - Trichomonas vaginalis G3
          Length = 104

 Score = 53.6 bits (123), Expect = 8e-07
 Identities = 23/62 (37%), Positives = 35/62 (56%)
 Frame = +3

Query: 93  PKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKPLR 272
           PK ++ +C                   RH+A GRRRYDRKQ+G+GG+ KPI ++ +K  +
Sbjct: 5   PKTKKFFCKFCKKHTMCKVSQASRGEERHSALGRRRYDRKQKGFGGRVKPILRRSKKTSK 64

Query: 273 KL 278
           K+
Sbjct: 65  KI 66


>UniRef50_Q9YF00 Cluster: 50S ribosomal protein L44E; n=15;
           Thermoprotei|Rep: 50S ribosomal protein L44E - Aeropyrum
           pernix
          Length = 95

 Score = 44.4 bits (100), Expect = 5e-04
 Identities = 24/70 (34%), Positives = 32/70 (45%)
 Frame = +3

Query: 93  PKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKPLR 272
           PK+ RTYC                   R  A G RRY RKQ+GYG Q +P  K+  K  +
Sbjct: 4   PKRIRTYCPRCNTHTEHRVAQYRAGKRRAMALGERRYRRKQEGYGSQRRPEQKRFAKVTK 63

Query: 273 KLCSVLSVPI 302
           K   V++  +
Sbjct: 64  KQVLVITCTV 73


>UniRef50_O59603 Cluster: 50S ribosomal protein L44E; n=15;
           Euryarchaeota|Rep: 50S ribosomal protein L44E -
           Pyrococcus horikoshii
          Length = 94

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 93  PKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKPLR 272
           PKQ RTYC                      + G+RR+ R  +GYGG  +P  + R+KP++
Sbjct: 4   PKQIRTYCPYCKRHTIHKVERVKRRPRSELSAGQRRFRRVLKGYGGFPRPKPEGREKPVK 63

Query: 273 KL 278
           KL
Sbjct: 64  KL 65


>UniRef50_A0RZ36 Cluster: Ribosomal protein L44E; n=1; Cenarchaeum
           symbiosum|Rep: Ribosomal protein L44E - Cenarchaeum
           symbiosum
          Length = 93

 Score = 39.9 bits (89), Expect = 0.011
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 93  PKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKPLR 272
           PKQ R YC                   R +A G RR+   ++GYGGQ  P   K  K  +
Sbjct: 4   PKQIRRYCPKCKKHTTQKVSIYKAGKRRASAIGERRHAEDKKGYGGQKFPKLAKPAKVTK 63

Query: 273 KLCSVLSVP 299
           K+  +L+ P
Sbjct: 64  KVTRLLTCP 72


>UniRef50_Q9HIX1 Cluster: 50S ribosomal protein L44E; n=5;
           Archaea|Rep: 50S ribosomal protein L44E - Thermoplasma
           acidophilum
          Length = 93

 Score = 37.9 bits (84), Expect = 0.044
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 90  VPKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKPL 269
           +PK+  TYC                        G+RR+ R   GYGG  +P F+ R+KP 
Sbjct: 3   MPKKIMTYCPYCKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREKPT 62

Query: 270 RKL 278
           +++
Sbjct: 63  KRI 65


>UniRef50_A3BKG6 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 89

 Score = 33.9 bits (74), Expect = 0.71
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 245 LQKEAKTTKKIVLRLECADCK 307
           L + AKTTKKIVL+L+C  CK
Sbjct: 42  LSRWAKTTKKIVLKLQCQSCK 62


>UniRef50_Q17E08 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 594

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 162 FXTVIPCXLCGIYIFCSTSC 103
           F T+IPC  C + +FCST C
Sbjct: 244 FLTLIPCKCCTVTMFCSTKC 263


>UniRef50_Q0V3K3 Cluster: Predicted protein; n=1; Phaeosphaeria
            nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
            (Septoria nodorum)
          Length = 2460

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 103  AGRTAKNVNATKXTRYHSXKSPRXGTLPRVEDVMIVNSRVTVVSPNPSSKRGKNH 267
            A RT ++ NA         +SPR  +LPR  D  IV+      SP    +R  +H
Sbjct: 1853 ADRTLESENADLPAPEPIVESPRDESLPRERDFAIVDGPAVESSPREKQRRRHSH 1907


>UniRef50_Q01W43 Cluster: Peptidase M50; n=1; Solibacter usitatus
           Ellin6076|Rep: Peptidase M50 - Solibacter usitatus
           (strain Ellin6076)
          Length = 321

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 240 VWTDHRNPAVYDHNVFYPGQRAXPW 166
           +W   R+P++YD  +  PG+R   W
Sbjct: 277 LWLGRRHPSIYDSTILSPGRRKLGW 301


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,087,814
Number of Sequences: 1657284
Number of extensions: 2977204
Number of successful extensions: 6732
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6724
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)