Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060454.seq
         (308 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    19   9.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   9.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   9.0  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 215 AGLRWSVQTHLQKEAKTTKKIVLR 286
           A ++ SVQ  L +  K TKK+ L+
Sbjct: 488 APVKISVQEVLNRVRKPTKKLHLK 511


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 213  QQGYGGQSKPIF 248
            Q   GG++KPIF
Sbjct: 1377 QTSGGGENKPIF 1388


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 213  QQGYGGQSKPIF 248
            Q   GG++KPIF
Sbjct: 1377 QTSGGGENKPIF 1388


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,384
Number of Sequences: 336
Number of extensions: 764
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5624413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)