Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060454.seq
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    57   5e-10
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    27   0.64 
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   2.6  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 57.2 bits (132), Expect = 5e-10
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIFKKRQ 260
           N+PK R+TYC                     +  AQG+RRYDRKQ G+GGQ+KP+F K+ 
Sbjct: 3   NIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKA 62

Query: 261 KPLRKL 278
           K  +K+
Sbjct: 63  KVTKKV 68



 Score = 35.5 bits (78), Expect = 0.002
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +2

Query: 251 KEAKTTKKIVLRLECADCK 307
           K+AK TKK+VLRLEC  CK
Sbjct: 60  KKAKVTKKVVLRLECVSCK 78


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 186 QGRRRYDRKQQGYGGQSKPIFKKRQKPLRKLCSVLSVP 299
           Q +++  ++ Q +   S+P+  KRQ+ LRK  +  S P
Sbjct: 155 QQQQQQQQQHQQHATPSEPVLSKRQQKLRKKAAKYSRP 192


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 224 RWSVQTHLQKEAKTTKKIVLRLEC 295
           ++ +Q HL+KE + TKK   R  C
Sbjct: 116 KYQMQVHLEKEEEITKKGFSRFLC 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,046
Number of Sequences: 5004
Number of extensions: 12356
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)