Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060454.seq
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 60 3e-10
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 60 3e-10
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 60 3e-10
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 60 3e-10
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 60 3e-10
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 60 3e-10
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 60 3e-10
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 33 0.060
01_06_0512 + 29942429-29942929 27 2.3
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 27 4.0
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 26 6.9
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 87 NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIFKKRQ 260
NVPK ++TYC + + AQG+RRYDRKQ GYGGQ+KP+F K+
Sbjct: 31 NVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKA 90
Query: 261 KPLRKL 278
K +K+
Sbjct: 91 KTTKKI 96
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 251 KEAKTTKKIVLRLECADCK 307
K+AKTTKKIVL+L+C CK
Sbjct: 88 KKAKTTKKIVLKLQCQSCK 106
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 87 NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIFKKRQ 260
NVPK ++TYC + + AQG+RRYDRKQ GYGGQ+KP+F K+
Sbjct: 3 NVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKA 62
Query: 261 KPLRKL 278
K +K+
Sbjct: 63 KTTKKI 68
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 251 KEAKTTKKIVLRLECADCK 307
K+AKTTKKIVL+L+C CK
Sbjct: 60 KKAKTTKKIVLKLQCQSCK 78
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 87 NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIFKKRQ 260
NVPK ++TYC + + AQG+RRYDRKQ GYGGQ+KP+F K+
Sbjct: 31 NVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKA 90
Query: 261 KPLRKL 278
K +K+
Sbjct: 91 KTTKKI 96
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 251 KEAKTTKKIVLRLECADCK 307
K+AKTTKKIVL+L+C CK
Sbjct: 88 KKAKTTKKIVLKLQCQSCK 106
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 87 NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIFKKRQ 260
NVPK ++TYC + + AQG+RRYDRKQ GYGGQ+KP+F K+
Sbjct: 3 NVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKA 62
Query: 261 KPLRKL 278
K +K+
Sbjct: 63 KTTKKI 68
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 251 KEAKTTKKIVLRLECADCK 307
K+AKTTKKIVL+L+C CK
Sbjct: 60 KKAKTTKKIVLKLQCQSCK 78
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 87 NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIFKKRQ 260
NVPK ++TYC + + AQG+RRYDRKQ GYGGQ+KP+F K+
Sbjct: 30 NVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKA 89
Query: 261 KPLRKL 278
K +K+
Sbjct: 90 KTTKKI 95
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 251 KEAKTTKKIVLRLECADCK 307
K+AKTTKKIVL+L+C CK
Sbjct: 87 KKAKTTKKIVLKLQCQSCK 105
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 87 NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIFKKRQ 260
NVPK ++TYC + + AQG+RRYDRKQ GYGGQ+KP+F K+
Sbjct: 31 NVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKA 90
Query: 261 KPLRKL 278
K +K+
Sbjct: 91 KTTKKI 96
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 251 KEAKTTKKIVLRLECADCK 307
K+AKTTKKIVL+L+C CK
Sbjct: 88 KKAKTTKKIVLKLQCQSCK 106
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 87 NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIFKKRQ 260
NVPK ++TYC + + AQG+RRYDRKQ GYGGQ+KP+F K+
Sbjct: 3 NVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKA 62
Query: 261 KPLRKL 278
K +K+
Sbjct: 63 KTTKKI 68
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 251 KEAKTTKKIVLRLECADCK 307
K+AKTTKKIVL+L+C CK
Sbjct: 60 KKAKTTKKIVLKLQCQSCK 78
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 32.7 bits (71), Expect = 0.060
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 257 AKTTKKIVLRLECADCK 307
AKTTKKIVL+L+C CK
Sbjct: 19 AKTTKKIVLKLQCQSCK 35
>01_06_0512 + 29942429-29942929
Length = 166
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -3
Query: 180 RAXPWTFXTVIPCXLCGIYIFCSTSCAVLVRSXF 79
RA W V+PC + G Y+ S A S F
Sbjct: 18 RAQVWACAVVVPCFIVGAYLAESYGAAAAASSFF 51
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 130 ATKXTRYHSXKSPRXGTLPRVEDVMIVNSRVTVVSPNPSS 249
+T T + + K P G++ + NS V +V P PS+
Sbjct: 821 STNITNFANLKEPFDGSIDLANVENVTNSNVVMVQPVPST 860
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 163 SPRXGTLPRVEDVMIVNSRV 222
SP+ T PRVED M++ S +
Sbjct: 454 SPQKQTAPRVEDDMVITSSI 473
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,036,675
Number of Sequences: 37544
Number of extensions: 85453
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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