Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060454.seq
(308 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 61 2e-10
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 35 0.016
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066) 28 1.8
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 28 1.8
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 28 1.8
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 26 5.4
SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3) 26 7.2
SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_50443| Best HMM Match : NinG (HMM E-Value=5.6) 25 9.5
SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20) 25 9.5
SB_51022| Best HMM Match : Cornifin (HMM E-Value=0.028) 25 9.5
SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14) 25 9.5
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6) 25 9.5
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 75 SKXXNVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA--AQGRRRYDRKQQGYGGQSKPIF 248
S NVPKQR+T+C + + AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 6 SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65
Query: 249 KKRQKPLRKL 278
K+ K +K+
Sbjct: 66 HKKAKTTKKI 75
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +2
Query: 251 KEAKTTKKIVLRLECADCK 307
K+AKTTKKIVLR+EC CK
Sbjct: 67 KKAKTTKKIVLRMECTQCK 85
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 34.7 bits (76), Expect = 0.016
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 257 AKTTKKIVLRLECADCK 307
AKTTKKIVLR+EC CK
Sbjct: 1 AKTTKKIVLRMECTQCK 17
>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
Length = 716
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 222 NPAVYDHNVFYPGQRAXPWTFXTVIPCXLCGIYIFCSTSCA 100
+P + DH VFYP P TF + + I ++ ST+ A
Sbjct: 167 HPILNDHGVFYPKALPHPLTFEITL-APVSDIVVYSSTTPA 206
>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1359
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 222 NPAVYDHNVFYPGQRAXPWTFXTVIPCXLCGIYIFCSTSCA 100
+P + DH VFYP P TF + + I ++ ST+ A
Sbjct: 1172 HPILNDHGVFYPKALPHPLTFEITL-ATVSDIVVYSSTTPA 1211
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 222 NPAVYDHNVFYPGQRAXPWTFXTVIPCXLCGIYIFCSTSCA 100
+P + DH VFYP P TF + + I ++ ST+ A
Sbjct: 1243 HPILNDHGVFYPKALPHPLTFEITL-APVSDIVVYSSTTQA 1282
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 94 QNSAGRTAKNVNATKXTRYH 153
+NS+GRT KN++AT H
Sbjct: 141 KNSSGRTCKNISATHKLSLH 160
>SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
Length = 280
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 144 CXLCGIYIFCSTSCAVLVRS 85
C LC Y+FC C + +RS
Sbjct: 217 CRLCDNYLFCLKFCDLRIRS 236
>SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 144 CXLCGIYIFCSTSCAVLVRS 85
C LC Y+FC C + +RS
Sbjct: 78 CRLCDNYLFCLKFCDLRIRS 97
>SB_50443| Best HMM Match : NinG (HMM E-Value=5.6)
Length = 477
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 237 WTDHRNPAVYDHNVFYPGQ 181
W D RN + D VFYPG+
Sbjct: 339 WKDGRNHGLGDVFVFYPGE 357
>SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20)
Length = 392
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 246 RWVWTDHRNPAVYDHN 199
+WVW +H NP +N
Sbjct: 129 KWVWYEHENPVKMSNN 144
>SB_51022| Best HMM Match : Cornifin (HMM E-Value=0.028)
Length = 312
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 148 YHSXKSPRXGTLPRVEDVMIVNSRVTVVSPNPS 246
+HS P P D + N TVV PNPS
Sbjct: 12 WHSMAQPVWHIWPNPSDTVWPNPSSTVVWPNPS 44
>SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14)
Length = 594
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 246 RWVWTDHRNPA 214
+WVW +H NPA
Sbjct: 310 KWVWYEHENPA 320
>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
Length = 399
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -3
Query: 198 VFYPGQRAXPWTFXTVIPCXLCGIYIFCSTSCAVLV 91
VFYP P V+ C + + C C +LV
Sbjct: 105 VFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLV 140
>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 246 RWVWTDHRNPAVYDHNVFY 190
+WVW +H NP HN+ Y
Sbjct: 145 KWVWYEHENP----HNIGY 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,154,238
Number of Sequences: 59808
Number of extensions: 109333
Number of successful extensions: 532
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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