Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060454.seq
         (308 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   1.1  
DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.       23   2.0  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    23   2.0  
AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    21   7.9  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 219  GYGGQSKPIFKKRQKPLRKLCSV 287
            G GG   PI  +++KP  K CSV
Sbjct: 1148 GPGGSKTPILNRKEKP--KSCSV 1168


>DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -3

Query: 297 AHSRRSTIFLVVFASF*RWVWTDHRNPAVYDHNVFYPGQRAXPWTF 160
           +H    TI ++V   + R +W +   P    +  F+P     P +F
Sbjct: 104 SHISADTILMIVNTLYFRGLWEEAFQPMATRNRRFFPNGPEGPDSF 149


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 210 KQQGYGGQSKPIFKKRQKPLRKLCSVLSV 296
           K+  Y    +PI+K+R   + KLC  + V
Sbjct: 102 KKLCYEQDCEPIWKERDDAVAKLCRTMDV 130


>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -3

Query: 240 VWTDHRNPAVYDHNVFYPGQRAXP 169
           VWTD       D+   YP   + P
Sbjct: 255 VWTDPTTTTTTDYTTAYPPTTSEP 278


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,656
Number of Sequences: 2352
Number of extensions: 3438
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 19884282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)