Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060454.seq
         (308 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029953-1|ABM92827.1|  104|Drosophila melanogaster IP17351p pro...    73   7e-14
AE014134-1388|AAF52596.2|  104|Drosophila melanogaster CG7424-PA...    73   7e-14
BT024261-1|ABC86323.1|  121|Drosophila melanogaster IP15820p pro...    59   1e-09
AY119056-1|AAM50916.1|  372|Drosophila melanogaster LP07209p pro...    26   8.2  
AF145692-1|AAD38667.1|  573|Drosophila melanogaster BcDNA.LD2989...    26   8.2  
AE014297-4773|AAF57174.1|  372|Drosophila melanogaster CG1792-PA...    26   8.2  
AE013599-1397|AAF58578.1|  573|Drosophila melanogaster CG8378-PA...    26   8.2  

>BT029953-1|ABM92827.1|  104|Drosophila melanogaster IP17351p
           protein.
          Length = 104

 Score = 72.9 bits (171), Expect = 7e-14
 Identities = 33/64 (51%), Positives = 40/64 (62%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKP 266
           NVPKQRRT+C                   R  AQGRRRYDRKQQG+GGQ+KPIF+K+ K 
Sbjct: 3   NVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAKT 62

Query: 267 LRKL 278
            +K+
Sbjct: 63  TKKI 66



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 248 QKEAKTTKKIVLRLECADCK 307
           +K+AKTTKKIVLR+EC +CK
Sbjct: 57  RKKAKTTKKIVLRMECTECK 76


>AE014134-1388|AAF52596.2|  104|Drosophila melanogaster CG7424-PA
           protein.
          Length = 104

 Score = 72.9 bits (171), Expect = 7e-14
 Identities = 33/64 (51%), Positives = 40/64 (62%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHAAQGRRRYDRKQQGYGGQSKPIFKKRQKP 266
           NVPKQRRT+C                   R  AQGRRRYDRKQQG+GGQ+KPIF+K+ K 
Sbjct: 3   NVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAKT 62

Query: 267 LRKL 278
            +K+
Sbjct: 63  TKKI 66



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 248 QKEAKTTKKIVLRLECADCK 307
           +K+AKTTKKIVLR+EC +CK
Sbjct: 57  RKKAKTTKKIVLRMECTECK 76


>BT024261-1|ABC86323.1|  121|Drosophila melanogaster IP15820p
           protein.
          Length = 121

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 174 RHAAQGRRRYDRKQQGYGGQSKPIFKKRQKPLRKL 278
           R  AQGRRRYDRKQQG+GGQ+KPIF+K+ K  +K+
Sbjct: 49  RKGAQGRRRYDRKQQGFGGQTKPIFRKKAKTTKKI 83



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 248 QKEAKTTKKIVLRLECADCK 307
           +K+AKTTKKIVLR+EC +CK
Sbjct: 74  RKKAKTTKKIVLRMECTECK 93


>AY119056-1|AAM50916.1|  372|Drosophila melanogaster LP07209p
           protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 144 CXLCGIYIFCST 109
           C  CG++IFCST
Sbjct: 6   CRTCGLFIFCST 17


>AF145692-1|AAD38667.1|  573|Drosophila melanogaster BcDNA.LD29892
           protein.
          Length = 573

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 162 FXTVIPCXLCGIYIFCSTSC 103
           + T+IPC  C   +FCS  C
Sbjct: 238 YLTLIPCDSCCSTMFCSEEC 257


>AE014297-4773|AAF57174.1|  372|Drosophila melanogaster CG1792-PA
           protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 144 CXLCGIYIFCST 109
           C  CG++IFCST
Sbjct: 6   CRTCGLFIFCST 17


>AE013599-1397|AAF58578.1|  573|Drosophila melanogaster CG8378-PA
           protein.
          Length = 573

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 162 FXTVIPCXLCGIYIFCSTSC 103
           + T+IPC  C   +FCS  C
Sbjct: 238 YLTLIPCDSCCSTMFCSEEC 257


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,028,819
Number of Sequences: 53049
Number of extensions: 139851
Number of successful extensions: 415
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)