Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060454.seq
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    62   1e-10
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    62   1e-10
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA-AQGRRRYDRKQQGYGGQSKPIFKKRQK 263
           NVPK RRT+C                       AQGRRRYDRKQ G+GGQ+KPIF+K+ K
Sbjct: 3   NVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAK 62

Query: 264 PLRKL 278
             +K+
Sbjct: 63  TTKKI 67



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 248 QKEAKTTKKIVLRLECADCK 307
           +K+AKTTKKIVLR+EC +CK
Sbjct: 58  RKKAKTTKKIVLRMECTECK 77


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRHA-AQGRRRYDRKQQGYGGQSKPIFKKRQK 263
           NVPK RRT+C                       AQGRRRYDRKQ G+GGQ+KPIF+K+ K
Sbjct: 3   NVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAK 62

Query: 264 PLRKL 278
             +K+
Sbjct: 63  TTKKI 67



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 248 QKEAKTTKKIVLRLECADCK 307
           +K+AKTTKKIVLR+EC +CK
Sbjct: 58  RKKAKTTKKIVLRMECTECK 77


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -3

Query: 231 DHRNPAVYDHNVFYPGQRAXPWTFXTVIPCXLCGIYIFCSTSCAVLV 91
           +H    V+  NV+ P Q   P     V+   LC I   C  S  + +
Sbjct: 38  NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,121,794
Number of Sequences: 27780
Number of extensions: 73790
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)