Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060454.seq
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   0.84 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   1.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   1.5  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 195 RRYDRKQQGYGGQSKPIFKKRQ 260
           R +  K++  GG+ KPI KKR+
Sbjct: 5   RDHWHKRRATGGKRKPIRKKRK 26


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 222  YGGQSKPIFKKRQKPLRKLCS 284
            YGG ++P +++R      +CS
Sbjct: 957  YGGDARPAYRRRLNVNETVCS 977


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 211 NSRVTVVSPNPSSKR 255
           N R TVVSP P+ +R
Sbjct: 896 NQRGTVVSPPPTKRR 910


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 211 NSRVTVVSPNPSSKR 255
           N R TVVSP P+ +R
Sbjct: 934 NQRGTVVSPPPTKRR 948


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,020
Number of Sequences: 438
Number of extensions: 1082
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)