Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060454.seq
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)      60   2e-10
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...    60   2e-10
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    28   1.5  
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ...    26   4.5  
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c...    25   7.8  
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ...    25   7.8  

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRH--AAQGRRRYDRKQQGYGGQSKPIFKKRQ 260
           N+PK + TYC                   +   AAQG+RRYDRKQ GYGGQ+KP+F K+ 
Sbjct: 3   NIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKA 62

Query: 261 KPLRKL 278
           K  +K+
Sbjct: 63  KTTKKI 68



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +2

Query: 251 KEAKTTKKIVLRLECADCK 307
           K+AKTTKKIVLRL+C  CK
Sbjct: 60  KKAKTTKKIVLRLQCQSCK 78


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 87  NVPKQRRTYCXXXXXXXXXXXXXXXXXXXRH--AAQGRRRYDRKQQGYGGQSKPIFKKRQ 260
           N+PK + TYC                   +   AAQG+RRYDRKQ GYGGQ+KP+F K+ 
Sbjct: 3   NIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKA 62

Query: 261 KPLRKL 278
           K  +K+
Sbjct: 63  KTTKKI 68



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +2

Query: 251 KEAKTTKKIVLRLECADCK 307
           K+AKTTKKIVLRL+C  CK
Sbjct: 60  KKAKTTKKIVLRLQCQSCK 78


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 150 IPCXLCGIYIFCSTSCAV 97
           +PC  C I ++CS SC +
Sbjct: 275 VPCPSCSIPVYCSESCQI 292


>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
            bromodomain-containing protein low similarity to
            SP|P51123 Transcription initiation factor TFIID 230 kDa
            subunit {Drosophila melanogaster}; contains Pfam
            profiles: PF00439 bromodomain, PF00240: Ubiquitin family
          Length = 1700

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 181  LPRVEDVMIVNSRVTVVSPNPSSKRGKNH*ENCAP 285
            LP  E     +SR T   P PS    K+  E+C P
Sbjct: 1356 LPSTETDQAASSRYTTSVPQPSLSIDKDQAESCRP 1390


>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
           contains 5 WD-40 repeats (PF00400); contains
           Beige/BEACH domain (Pfam PF02138);  FACTOR ASSOCIATED
           WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
           sapiens;similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 909

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 216 AVYDHNVFYPG--QRAXPWTFXTVIPCXLCGIYIFCS 112
           +VY+ N  YP   QR   WT    IP   C   IFCS
Sbjct: 459 SVYEPNE-YPSDMQRLYDWTPDECIPEFYCDPRIFCS 494


>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type, domain
          Length = 745

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 100 SAGRTAKNVNATKXTRYHSXKSPR 171
           S+G +  + NATK   +HS  +P+
Sbjct: 461 SSGSSLSSANATKRNNHHSSSTPK 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,817,038
Number of Sequences: 28952
Number of extensions: 68255
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)