Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060453.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    30   0.27 
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    28   1.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   5.9  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   7.8  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 514 LSEHLGDYVFGGEGLDAVVTQLLGQ 588
           LS + GDY +G  GLD +++QL+ Q
Sbjct: 338 LSGNPGDYAWGARGLDDIISQLMEQ 362


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 567 YCV*AFSSKNIVSQVLRQVQWCTSSCSTSARPPGXHH 457
           YC+ A SS+ +V     Q+   + + +++ARPP  HH
Sbjct: 192 YCIFADSSEKMVVSSEEQIICISLNPNSAARPPFSHH 228


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 94  NFQQKFNNRHFFEHSQSMDFLKKKKKTR 11
           N + K +N+H    S+ + F KK++ T+
Sbjct: 30  NLRSKSDNKHRLNTSEELPFTKKRRATK 57


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 535 SLPGAPTSTMVHQQL*HQCPASRXPSSRVTVRGLYLFYLCFGTDLPSSGMLNR 377
           S+P +PTS +      +  P  R  S++  V G   F L     L S G L+R
Sbjct: 36  SIPYSPTSPLSRNFSNYSIPMLRSNSTQTNVNGPTAFDLGVTEKLMSPGTLDR 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,205
Number of Sequences: 5004
Number of extensions: 51920
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)