Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060453.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   30   2.0  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     29   3.5  
SB_45010| Best HMM Match : Chromadorea_ALT (HMM E-Value=7.3)           29   4.7  
SB_57317| Best HMM Match : SSF (HMM E-Value=0)                         28   8.1  

>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 182 VERRPTLRFFCHRCDIEFEDVLQDLHAHI 268
           VE+  T+   C  CD+ FED++Q L  H+
Sbjct: 363 VEQGQTIECGCCYCDVAFEDMVQCLDGHL 391


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 151 TTAPINTYYLNSIPKDCALNFQQKFNNRHFFEHSQSMDFLKK 26
           T    N Y+ +S  + C LN+Q K     +F+  +++D+ +K
Sbjct: 412 TCRSYNYYHDDSDQQVCELNYQTKQGKESYFKQDKTVDYYQK 453


>SB_45010| Best HMM Match : Chromadorea_ALT (HMM E-Value=7.3)
          Length = 214

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 295 ESEAXGDFDDADMSNLDDDRQAPPPML 375
           E +  G+ DD D SN DDD  A PP++
Sbjct: 102 EDDDDGNDDDDDDSNDDDDDSAVPPVV 128


>SB_57317| Best HMM Match : SSF (HMM E-Value=0)
          Length = 389

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 517 SEHLGDYVFGGEGLDAVVTQLLGQFGELRGLLL 615
           +++L DY+ GG  L + VT L     ++ G LL
Sbjct: 47  TKNLSDYILGGRSLGSFVTALSAGASDMSGWLL 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922,590
Number of Sequences: 59808
Number of extensions: 407732
Number of successful extensions: 942
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)