Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060453.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    30   1.8  
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    30   1.8  
Z78415-4|CAB01673.2|  281|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z82266-17|CAJ80813.1|  446|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z82266-16|CAJ80812.1|  423|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z82266-14|CAD36490.1|  467|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z82266-10|CAJ80811.1|  331|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z68213-11|CAJ80817.1|  446|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z68213-10|CAJ80816.1|  423|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z68213-8|CAA92439.3|  467|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF303262-1|AAG50220.1|  362|Caenorhabditis elegans gap junction ...    27   9.5  
AF067219-8|AAC17025.1|  362|Caenorhabditis elegans Innexin prote...    27   9.5  

>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform b protein.
          Length = 1051

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 523 HLGDYVFGGEGLDAVVTQ--LLGQFGELRGLLLYHG 624
           H+G  + G EG+ AV+     +GQF  L  LLL HG
Sbjct: 604 HIGVGISGQEGMQAVLASDYSIGQFKYLERLLLVHG 639


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform a protein.
          Length = 1222

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 523 HLGDYVFGGEGLDAVVTQ--LLGQFGELRGLLLYHG 624
           H+G  + G EG+ AV+     +GQF  L  LLL HG
Sbjct: 775 HIGVGISGQEGMQAVLASDYSIGQFKYLERLLLVHG 810


>Z78415-4|CAB01673.2|  281|Caenorhabditis elegans Hypothetical
           protein C17G1.5 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 402 RSVPKHR*KRYNPRTVTLDDGXREAGHWCYNC 497
           RS P         ++V + DG  +  HWCY C
Sbjct: 107 RSKPSFEMSSLTRKSVEISDGIDDDDHWCYYC 138


>Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical
           protein W04G3.5 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 310 GDFDDADMSNLDDDRQAPPPMLNDLAFL 393
           G+  D + S L+D RQ+PPP +    FL
Sbjct: 200 GEQKDEEESGLEDGRQSPPPNVTSYDFL 227


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 182 VERRPTLRFFCHRCDIEFEDV 244
           +ER    R F  RCDIE+ED+
Sbjct: 504 IERGTEKRTFAERCDIEYEDI 524


>Z82266-17|CAJ80813.1|  446|Caenorhabditis elegans Hypothetical
           protein C01F6.6d protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 424 MKNRKHHLHEMSLNEKYQLV 443


>Z82266-16|CAJ80812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01F6.6c protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 401 MKNRKHHLHEMSLNEKYQLV 420


>Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 586 MKNRKHHLHEMSLNEKYQLV 605


>Z82266-14|CAD36490.1|  467|Caenorhabditis elegans Hypothetical
           protein C01F6.6a protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 445 MKNRKHHLHEMSLNEKYQLV 464


>Z82266-10|CAJ80811.1|  331|Caenorhabditis elegans Hypothetical
           protein C01F6.6e protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 309 MKNRKHHLHEMSLNEKYQLV 328


>Z68213-11|CAJ80817.1|  446|Caenorhabditis elegans Hypothetical
           protein C01F6.6d protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 424 MKNRKHHLHEMSLNEKYQLV 443


>Z68213-10|CAJ80816.1|  423|Caenorhabditis elegans Hypothetical
           protein C01F6.6c protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 401 MKNRKHHLHEMSLNEKYQLV 420


>Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 586 MKNRKHHLHEMSLNEKYQLV 605


>Z68213-8|CAA92439.3|  467|Caenorhabditis elegans Hypothetical
           protein C01F6.6a protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  VENLKHNL*ELSLNNKYLLV 144
           ++N KH+L E+SLN KY LV
Sbjct: 445 MKNRKHHLHEMSLNEKYQLV 464


>AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.4 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 286 EQLESEAXGDFDDADMSNLDDDRQAPPP 369
           ++L SEA  D D+ ++ +LDDD   P P
Sbjct: 452 KRLYSEAFDDKDEQEVIDLDDDDDEPDP 479


>AF303262-1|AAG50220.1|  362|Caenorhabditis elegans gap junction
           innexin protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -3

Query: 429 SSTCVSVPTSRHQEC*IVKHWWWCLAIIVQVAHICIVKITXRFTLQLLYKTTSTIWACKS 250
           S  CV +    +++  I   WW+ L  I+ +    I ++  RFT+       + I AC  
Sbjct: 252 SLQCVLMVNMFNEKLFIALWWWYALLAILSI--FDIFRVLFRFTIHHQISFITRILACTG 309

Query: 249 CKTSSNSISHLWQKNRSV 196
              S+ S + + + NR V
Sbjct: 310 --DSAISATEVGEFNRKV 325


>AF067219-8|AAC17025.1|  362|Caenorhabditis elegans Innexin protein
           17, isoform a protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -3

Query: 429 SSTCVSVPTSRHQEC*IVKHWWWCLAIIVQVAHICIVKITXRFTLQLLYKTTSTIWACKS 250
           S  CV +    +++  I   WW+ L  I+ +    I ++  RFT+       + I AC  
Sbjct: 252 SLQCVLMVNMFNEKLFIALWWWYALLAILSI--FDIFRVLFRFTIHHQISFITRILACTG 309

Query: 249 CKTSSNSISHLWQKNRSV 196
              S+ S + + + NR V
Sbjct: 310 --DSAISATEVGEFNRKV 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,040
Number of Sequences: 27780
Number of extensions: 312171
Number of successful extensions: 734
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)