Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060453.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa... 34 0.077
At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger) fa... 32 0.41
At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase fa... 31 0.95
At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger) fa... 30 1.7
At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger) fa... 30 1.7
At2g29910.2 68415.m03633 F-box family protein contains F-box dom... 29 2.2
At2g29910.1 68415.m03632 F-box family protein contains F-box dom... 29 2.2
At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR... 29 2.9
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At3g58580.1 68416.m06529 endonuclease/exonuclease/phosphatase fa... 29 3.8
At3g23120.1 68416.m02914 leucine-rich repeat family protein cont... 29 3.8
At1g79190.1 68414.m09233 expressed protein 27 8.8
>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 351
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 247 AGFTCPYCASGFIEQLESEAXGDFDDADMSNLDDDRQAPPPMLNDL 384
A CP+C SGF+E++E + D D +D +++ + P+L +L
Sbjct: 24 AEIKCPFCQSGFVEEMEDD--DDHDSSDPADVRANNSLWAPILMEL 67
>At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 395
Score = 31.9 bits (69), Expect = 0.41
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 247 AGFTCPYCASGFIEQLESEA 306
AG CPYC GFIE++E +
Sbjct: 50 AGVLCPYCNGGFIEEIEDSS 69
>At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase
family protein similar to SP|P31384 Glucose-repressible
alcohol dehydrogenase transcriptional effector (Carbon
catabolite repressor protein 4) {Saccharomyces
cerevisiae}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 602
Score = 30.7 bits (66), Expect = 0.95
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = -3
Query: 411 VPTSRHQEC*IVKHWWWCLAIIVQVAHICIVKITXRFTLQLLYKTTSTIWACKSCKTSSN 232
VP S E +K+ W+ + +VA IC V + TLQ L S + KS S+
Sbjct: 38 VPESAPLEGHFLKYRWFRVQSDKKVA-ICSVHPSETATLQCLGCLKSKVPVAKSYHCSTK 96
Query: 231 SISHLWQKNRSVGLRSTIAS 172
S WQ +R + R+ A+
Sbjct: 97 CFSDAWQHHRVLHERAASAA 116
>At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 247 AGFTCPYCASGFIEQLESEAXG 312
A CP+C SGF+E++ E G
Sbjct: 20 AEIKCPFCQSGFVEEMSREING 41
>At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 247 AGFTCPYCASGFIEQLESEAXG 312
A CP+C SGF+E++ E G
Sbjct: 20 AEIKCPFCQSGFVEEMSREING 41
>At2g29910.2 68415.m03633 F-box family protein contains F-box domain
Pfam:PF00646
Length = 335
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 286 EQLESEAXGDFDDADMSNLDDDRQAPPPMLNDLAFLMTG 402
E+L E G + D D S DD+ P+L D+ L+TG
Sbjct: 260 ERLRDEKAGGYGDCD-SVYDDEEYPDDPILGDVTNLVTG 297
>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
Pfam:PF00646
Length = 352
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 286 EQLESEAXGDFDDADMSNLDDDRQAPPPMLNDLAFLMTG 402
E+L E G + D D S DD+ P+L D+ L+TG
Sbjct: 260 ERLRDEKAGGYGDCD-SVYDDEEYPDDPILGDVTNLVTG 297
>At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. False intron
created at intron 2 to escape a frameshift in the BAC
sequence.
Length = 1165
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -3
Query: 522 LRQVQWCTSSCSTSARPPGXHHPE*LFEDCISSTCVSVPTSRHQEC 385
L +V WC + S +A P+ L + SS CV R C
Sbjct: 909 LTEVSWCNKTISVAAATADNIQPKLLVSEASSSLCVQKSVVRFINC 954
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 259 CPYCASGFIEQLESEAXG 312
CP+C SGFIE++ G
Sbjct: 28 CPFCQSGFIEEMSGNGGG 45
>At3g58580.1 68416.m06529 endonuclease/exonuclease/phosphatase
family protein similar to SP|P31384 Glucose-repressible
alcohol dehydrogenase transcriptional effector (Carbon
catabolite repressor protein 4) {Saccharomyces
cerevisiae}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 605
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = -3
Query: 429 SSTCVSVPTSRHQEC*IVKHWWWCLAIIVQVAHICIVKITXRFTLQLLYKTTSTIWACKS 250
+ST VP S E +++ W+ + +V IC V T + TLQ ++ + KS
Sbjct: 32 NSTTDDVPESAPLEGYFLRYRWYRVQSDKKVT-ICSVHPTEQATLQCVFCSKRRSLVPKS 90
Query: 249 CKTSSNSISHLWQKNRSVGLRS 184
S + WQ +R++ R+
Sbjct: 91 YHCSPKCFTDAWQHHRTLHERA 112
>At3g23120.1 68416.m02914 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-5b GB:AAC78595
[Lycopersicon esculentum] (Plant Cell 10, 1915-1926
(1998);
Length = 784
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 552 FSSKNIVSQVLRQVQWCTSSCSTSARPPGXHHPE*LFEDCISSTCVSVPTSRHQE 388
FS ++ V R Q+ T +CS+ PG + L E C S V VPTS+ +
Sbjct: 688 FSHNHLQGFVPRSTQFGTQNCSSFVGNPGLYG---LDEICRESHHVPVPTSQQHD 739
>At1g79190.1 68414.m09233 expressed protein
Length = 1274
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 454 RVTVRGLYLFYLCFGTDLPSSGMLN 380
+V + G+ +F LC G D SSG L+
Sbjct: 739 QVIIEGVGVFSLCLGKDFASSGFLH 763
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,210
Number of Sequences: 28952
Number of extensions: 281555
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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