Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060452.seq
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    80   3e-16
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    57   2e-09
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    55   1e-08
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   1.3  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    27   2.9  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    25   8.8  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   8.8  

>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  FREVFRGANPLAINXXXXXXXXDADKRITAEQALAHEYLAQYADPTDEPVS-APYDQSFE 193
           F E F+ A+P AI+        D  KRI+A  ALAH YLA Y DPTDEPV+   +D SF+
Sbjct: 261 FAEKFKNADPDAIDLLEKMLVFDPRKRISAADALAHNYLAPYHDPTDEPVADEVFDWSFQ 320

Query: 194 DMELPVDKWKELVWKEVVEF 253
           D +LPV+ WK +++ EV+ F
Sbjct: 321 DNDLPVETWKVMMYSEVLSF 340


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
 Frame = +2

Query: 17  FREVFRGANPLAINXXXXXXXXDADKRITAEQALAHEYLAQYADPTDEPVSAPYDQSF-- 190
           F+ +F  A+P AI+        + DKRITAE+AL H Y+A Y D +DEP ++P   +   
Sbjct: 289 FKALFPQASPDAIDLLEKLLTFNPDKRITAEEALKHPYVAAYHDASDEPTASPMPPNLVD 348

Query: 191 -----EDMELPVDKWKELVWKEV 244
                ED+E+PV   K L+++EV
Sbjct: 349 LYCNKEDLEIPV--LKALIFREV 369


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +2

Query: 17  FREVFRGANPLAINXXXXXXXXDADKRITAEQALAHEYLAQYADPTDEPV-SAPYDQSFE 193
           F   F  ANPLA++        D ++RI+ + AL H YLA + DP+DEPV  + +D SFE
Sbjct: 276 FETNFPKANPLALDLLAKLLAFDPNRRISVDDALEHPYLAVWHDPSDEPVCDSVFDFSFE 335

Query: 194 DMELPVDKWKELVWKEVVEF 253
            +E   ++ + ++  EV+ F
Sbjct: 336 YIE-DANELRRVILDEVLNF 354


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 83   DADKRITAEQALAHEYLAQYADPTDEPVSAPYDQSF 190
            D D+R+T +QA  H++L    D    P +AP  Q F
Sbjct: 979  DPDERMTPQQAAQHDFLTGKQD-VRRPNTAPARQKF 1013


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 83  DADKRITAEQALAHEYL 133
           D +KRI+AE+AL H++L
Sbjct: 417 DCNKRISAEEALDHDFL 433


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 38  ANPLAINXXXXXXXXDADKRITAEQALAHEY 130
           AN  AI+        D  +R+T ++A+AH Y
Sbjct: 297 ANDEAIDLLNRLLRYDHQERLTCQEAMAHPY 327


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 89  DKRITAEQALAHEYLAQYADPTDEPVSAPYDQSFE 193
           D+R++A  AL HEY      P +      Y  S E
Sbjct: 325 DERLSASMALEHEYFTTPPYPANPSELQSYSASHE 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,937
Number of Sequences: 5004
Number of extensions: 31128
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)