Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060451.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    27   0.19 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    27   0.19 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.1  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   5.4  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    22   5.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.4  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 146 HKPTPYSPNFPASHGYVPPPEGEKPNESYPMHPQSGFLAHHPLLCHTPAYILGHNP 313
           +K  P S N+     YV   +GE PN ++  +  SG       + H P   +GH P
Sbjct: 362 NKNHPNSENYINHQNYVQGYQGEHPNYNHYGYHYSGDGGE---VAHLPNTHMGHEP 414


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 146 HKPTPYSPNFPASHGYVPPPEGEKPNESYPMHPQSGFLAHHPLLCHTPAYILGHNP 313
           +K  P S N+     YV   +GE PN ++  +  SG       + H P   +GH P
Sbjct: 310 NKNHPNSENYINHQNYVQGYQGEHPNYNHYGYHYSGDGGE---VAHLPNTHMGHEP 362


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +2

Query: 137  TMSHKPTPYSPNFPASHGYVPPPEGEKPNESYPMHP 244
            T S    P + N+P     +PPP    P    P  P
Sbjct: 1067 TTSTTTRPTTTNWPTQGTTIPPPAVVMPEVDKPSQP 1102



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 167  PNFPASHGYVP-PPEGEKPNESYPMHPQSGF 256
            P +  +  + P PP  EKP     + PQSG+
Sbjct: 1367 PEWQPTEWHPPIPPTSEKPPLPEELKPQSGY 1397



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 149  KPTPYSPNFPASHGYVPPPEGEKPNESY 232
            +PT + P  P +    P PE  KP   Y
Sbjct: 1370 QPTEWHPPIPPTSEKPPLPEELKPQSGY 1397


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +2

Query: 161 YSPNFPASHGYVPPPE-GEKPNESYPMHPQSGFLAHHPLLCHTPAYILGHN 310
           +SP+   S  Y P    G   +    MH   G  A H    H PA   GH+
Sbjct: 405 FSPHAGPSGAYSPDGTMGYMMDGQQMMHRPPGDPAFHNQYAHYPAEYYGHH 455


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 313 LPGMQHGFQP-GFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 441
           LP   + F P G  P + PG +P  P  S +P  V   P  + P
Sbjct: 217 LPSDFYRFSPTGLIPPH-PGLSPHPPHLSSHPAIVTPGPKQELP 259


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 313 LPGMQHGFQP-GFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 441
           LP   + F P G  P + PG +P  P  S +P  V   P  + P
Sbjct: 109 LPSDFYRFSPTGLIPPH-PGLSPHPPHLSSHPAIVTPGPKQELP 151


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 155 TPYSPNFPASHGYVPPPEGE 214
           TP  P+F  +H  + PP  E
Sbjct: 93  TPIVPHFAYNHNPLTPPNSE 112


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 297 SWGTTPSGHAAWVPARISTWLSTRI 371
           SWG    G+  +VP  I+  L T I
Sbjct: 31  SWGAQRPGNGQFVPEDINPDLCTHI 55


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 454 NMPQGLQQLPSRFGIPFHVXQLIMHQXS*IIRSFCXGRD 570
           N P+GL  + + +G+P H      H  +    S   GR+
Sbjct: 53  NHPRGLTIIQNGYGLPGHTIIASNHHLAKSDTSSASGRE 91


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 683 LKXSRSKFFWCQQSLSLNPHNK 618
           LK    K   C Q+L +NPH +
Sbjct: 603 LKHIVPKLQLCMQNLVINPHQQ 624


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
 Frame = +1

Query: 307 QPLPGM---QHGFQPGFQPGYQPGFAPGYPQPSGYPVP 411
           QP PG      G + G  P +  G   G   P G P P
Sbjct: 44  QPDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYP 81


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 376 PGYPQPSGYPVPVMQQPG 429
           P  P+P+    P++Q+PG
Sbjct: 87  PVAPEPAPLASPLVQEPG 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,732
Number of Sequences: 336
Number of extensions: 3657
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)